Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactacaagttgggtcgaattgtttagctacagaagaaaaaagtagaatcatgggtcctttttccaggagtgaattggacgttgatgatatttataacccttgtttgtgatgctatgaaccagGGCACACCATGGGTTCGGATGGGTTGGCGAGTGGGCGAACACAGG

Basic information

species Zea mays
transcript GRMZM2G113439_T01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G113439_T02 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os02g34650.1 (Oryza sativa), 3'ss of exon 7
gtactacaagttgggtcgaattgtttagctacagaagaaaaaagtagaatcatgggtcctttttccaggagtgaattggacgttgatgatatttataacccttgtttgtgatgctatgaaccagGGCACACCATGGGTTCGGATGGGTTGGCGAGTGGGCGAACACAGG
                                     | |  | |  ||  ||    ||    |       |      ||   ||| | | | | | | | ||| |||| ||||||   | ||| || |||||||| ||||||||||| ||||||||||||||||||||
-----------------------------------gtatagcactgaaaagatccagccagcctttgattctactccagatactgacgttctgt-tcatcattgcttgt-atgctac--atcagAGCTCACCATGGATTCGGATGGGTCGGCGAGTGGGCGAACACAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtgaattggacgttgatgatatttataacccttgtttgtgatgctatgaaccagGGCACACCATGGGTTCGGATGGGTTGGCGAGTGGGCGAACACAGG
                       ttataac  putative branch site (score: 2)
             ttgatgatatttataa  TA-rich tract