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gttgttcaattgttctttgcaatgtcttacatgcacccttccttttttttataaccaaaatagaactaattgtttttcaatctgtgttctggaccaaatcttatagGGAGGAGTCAATAGAACATGAAGGGGATGATGAGATTTCTGTGCAGACAAGTCCACAAAAGTCCCTTGAGGAGGAATATTTGGAAACTGAAAAGAAG
species | Zea mays |
transcript | GRMZM2G102196_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATTGAGCGGATACGCACATACGTGGATAATTTGGCAGTCTTAAACTCTAG GGAGGAGTCAATAGAACATGGAGGGGATGATGAGATTTCTGAGCAGACAAGEST: gi|60354570|gb|DN221543.1|DN221543
genomic: ATTGAGCGGATACGCACATACGTGGATAATTTGGCAGTCTTAAACTCTAGgttgttcaat ... aatcttatagGGAGGAGTCAATAGAACATGAAGGGGATGATGAGATTTCTGTGCAGACAAG
EST: ATTGAGCGGATACGCACATACGTGGATAATTTGGCAGTCTTAAACTCTAG GGAGGAGTCAATAGAACATGAAGGGGATGATGAGATTTCTGTGCAGACAAGEST: gi|4621437|gb|AI612270.1|AI612270
genomic: ATTGAGCGGATACGCACATACGTGGATAATTTGGCAGTCTTAAACTCTAGgttgttcaat ... aatcttatagGGAGGAGTCAATAGAACATGAAGGGGATGATGAGATTTCTGTGCAGACAAG
EST: ATTGAGCGGATACGCACATACGTGGATAATTTGGCAGTCTTAAACTCTAG GGAGGAGTCAATAGAACATGAAGGGGATGATGAGATTTCTGTGCAGACAAGEST: gi|60339229|gb|DN206202.1|DN206202
genomic: ATTGAGCGGATACGCACATACGTGGATAATTTGGCAGTCTTAAACTCTAGgttgttcaat ... aatcttatagGGAGGAGTCAATAGAACATGAAGGGGATGATGAGATTTCTGTGCAGACAAG
EST: ATTGAGCGGATACGCACATACGTGGATAATTTGGCAGTCTTAAACTCTAG GGAGGAGTCAATAGAACATGAAGGGGATGATGAGATTTCTGTGCAGACAAGEST: gi|31352028|gb|CD436385.1|CD436385
genomic: ATTGAGCGGATACGCACATACGTGGATAATTTGGCAGTCTTAAACTCTAGgttgttcaat ... aatcttatagGGAGGAGTCAATAGAACATGAAGGGGATGATGAGATTTCTGTGCAGACAAG
EST: CTTGAGCGGATACACACATACGTGGATAATTTGGCAGTCTTAAACTCTAG GGAGGAGTCAATAGAACATGGAGGGGATGATGAGATTTCTGAGCAGACAAGEST: gi|60340698|gb|DN207671.1|DN207671
genomic: ATTGAGCGGATACGCACATACGTGGATAATTTGGCAGTCTTAAACTCTAGgttgttcaat ... aatcttatagGGAGGAGTCAATAGAACATGAAGGGGATGATGAGATTTCTGTGCAGACAAG
EST: ATTGAGCGGATACGCACATACGTGGATAATTTGGCAGTCTTAAACTCTAG GGAGGAGTCAATAGAACATGAAGGGGATGATGAGATTTCTGTGCAGACAAGEST: gi|60337011|gb|DN203984.1|DN203984
genomic: ATTGAGCGGATACGCACATACGTGGATAATTTGGCAGTCTTAAACTCTAGgttgttcaat ... aatcttatagGGAGGAGTCAATAGAACATGAAGGGGATGATGAGATTTCTGTGCAGACAAG
EST: ATTGAGCGGATACGCACATACGTGGATAATTTGGCAGTCTTAAACTCTAG GGAGGAGTCAATAGAACATGAAGGGGATGATGAGATTTCTGTGCAGACAAG
genomic: ATTGAGCGGATACGCACATACGTGGATAATTTGGCAGTCTTAAACTCTAGgttgttcaat ... aatcttatagGGAGGAGTCAATAGAACATGAAGGGGATGATGAGATTTCTGTGCAGACAAG
taaccaaaatagaactaattgtttttcaatctgtgttctggaccaaatcttatagGGAGGAGTCAATAGAACATGAAGGGGATGATGAGATTTCTGTGCAGACAAGTCCACAAAAGTCCCTTGAGGAGGAATATTTGGAAACTGAAAAGAAG
aactaat putative branch site (score: 2)
aaaatagaactaattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgttcaattgttctttgcaatgtcttacatgcacccttccttttttttataaccaaaatagaactaattgtttttcaatctgtgttctggaccaaatcttatagGGAGGAGTCAATAGAACATGAAGGGGATGATGAGATTTCTGTGCAGACAAGTCCACAAAAGTCCCTTGAGGAGGAATATTTGGAAACTGAAAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG