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...gtgaatgaacctttaatggatcctgaaatcgtgatgttcttatgtttgaagcatagctaggtagatctacttacttcttgtttatatgatggttacacagATTACAAACTGGTTCCATTCTTGCCCATGAGATGATGCATGCATATCTTCGTCTCAAAG
species | Zea mays |
transcript | GRMZM2G099328_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TCTCGGCGGTGTGAAGTGACTGCAATCCTTATATTATATGGTCTGCCAAG ATTACAAACTGGTTCCATTCTTGCCCATGAGATGATGCATGCATATCTTCGEST: gi|76910058|gb|DV163680.1|DV163680
genomic: TCTCGGCGGTGTGAAGTGACTGCAATCCTTATATTATATGGTCTGCCAAGgtaaattatt ... ggttacacagATTACAAACTGGTTCCATTCTTGCCCATGAGATGATGCATGCATATCTTCG
EST: GACTGCAATCCTTATATTATATGGTCTGCCAAG ATTACAAACTGGTTCCATTCTTGCCCATGAGATGATGCATGCATATCTTCGEST: gi|14203375|gb|BG837052.1|BG837052
genomic: GACTGCAATCCTTATATTATATGGTCTGCCAAGgtaaattatt ... ggttacacagATTACAAACTGGTTCCATTCTTGCCCATGAGATGATGCATGCATATCTTCG
EST: TCTCGGCGGTGTGAAGTGACTGCAATCCTTATATTATATGGTCTGCCAAG ATTACAAACTGGTTCCATTCTTGCCCATGAGATGATGCATGCATATCTTCGEST: gi|32859029|gb|CD998710.1|CD998710
genomic: TCTCGGCGGTGTGAAGTGACTGCAATCCTTATATTATATGGTCTGCCAAGgtaaattatt ... ggttacacagATTACAAACTGGTTCCATTCTTGCCCATGAGATGATGCATGCATATCTTCG
EST: TCTCGGCGGTGTGAAGTGACTGCAATCCTTATATTATATGGTCTGCCAAG ATTACAAACTGGTTCCATTCTTGCCCATGAGATGATGCATGCATATCTTCGEST: gi|71773668|gb|DR971565.1|DR971565
genomic: TCTCGGCGGTGTGAAGTGACTGCAATCCTTATATTATATGGTCTGCCAAGgtaaattatt ... ggttacacagATTACAAACTGGTTCCATTCTTGCCCATGAGATGATGCATGCATATCTTCG
EST: CTGCAATCCTTATATTATATGGTCTGCCAAG ATTACAAACTGGTTCCATTCTTGCCCATGAGATGATGCATGCATATCTTTGEST: gi|31362847|gb|CD447204.1|CD447204
genomic: CTGCAATCCTTATATTATATGGTCTGCCAAGgtaaattatt ... ggttacacagATTACAAACTGGTTCCATTCTTGCCCATGAGATGATGCATGCATATCTTCG
EST: TCTCGGCGGTGTGAAGTGACTGCAATCCTTATATTATATGGTCTGCCAAG ATTACAAACTGGTTCCATTCTTGCCCATGAGATGATGCATGCATATCTTCG
genomic: TCTCGGCGGTGTGAAGTGACTGCAATCCTTATATTATATGGTCTGCCAAGgtaaattatt ... ggttacacagATTACAAACTGGTTCCATTCTTGCCCATGAGATGATGCATGCATATCTTCG
ttgaagcatagctaggtagatctacttacttcttgtttatatgatggttacacagATTACAAACTGGTTCCATTCTTGCCCATGAGATGATGCATGCATATCTTCGTCTCAAAG
tacttac putative branch site (score: 1)
ttgtttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaatgaacctttaatggatcctgaaatcgtgatgttcttatgtttgaagcatagctaggtagatctacttacttcttgtttatatgatggttacacagATTACAAACTGGTTCCATTCTTGCCCATGAGATGATGCATGCATATCTTCGTCTCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG