1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aattgtcaggaatcaaccataacttgtatactgttcctgttgctgttttccactaaactgctgcagctacatcgatatgcttattgttttctgcatgcagGTTTGTGAAAATCATCCACAGGGTGTCATTTTGGTGAAATTCAAAGATAGAAAAGATGGTGCCAAATGCATAGAGAAGATGAACGGTAGATG
species | Zea mays |
transcript | GRMZM2G074351_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTGATGTTAGAGAGGAATGCATCAAGTTTGGTCCTGTGGATAATGTCAAG GTTTGTGAAAATCATCCACAGGGTGTCATTTTGGTGAAATTCAAAGATAGAEST: gi|211121225|gb|FL444926.1|FL444926
genomic: CTGATGTTAGAGAGGAATGCATCAAGTTTGGTCCTGTGGATAATGTCAAGgtacacttaa ... ctgcatgcagGTTTGTGAAAATCATCCACAGGGTGTCATTTTGGTGAAATTCAAAGATAGA
EST: CTGATGTTAGAGAGGAATGCATCAAGTTTGGTCCTGTGGATAATGTCAAG GTTTGTGAAAATCATCCACAGGGTGTCATTTTGGTGAAATTCAAAGATAGAEST: gi|60339717|gb|DN206690.1|DN206690
genomic: CTGATGTTAGAGAGGAATGCATCAAGTTTGGTCCTGTGGATAATGTCAAGgtacacttaa ... ctgcatgcagGTTTGTGAAAATCATCCACAGGGTGTCATTTTGGTGAAATTCAAAGATAGA
EST: CTGATGTTAGAGAGGAATGCATCAAGTTTGGTCCTGTGGATAATGTCAAG GTTTGTGAAAATCATCCACAGGGTGTCATTTTGGTGAAATTCAAAGATAGAEST: gi|93283666|gb|EB675930.1|EB675930
genomic: CTGATGTTAGAGAGGAATGCATCAAGTTTGGTCCTGTGGATAATGTCAAGgtacacttaa ... ctgcatgcagGTTTGTGAAAATCATCCACAGGGTGTCATTTTGGTGAAATTCAAAGATAGA
EST: TGGATAATGTCAAG GTTTGTGAAAATCATCCACAGGGTGTCATTTTGGTGAAATTCAAAGATAGAEST: gi|32837936|gb|CD977614.1|CD977614
genomic: TGGATAATGTCAAGgtacacttaa ... ctgcatgcagGTTTGTGAAAATCATCCACAGGGTGTCATTTTGGTGAAATTCAAAGATAGA
EST: CTGATGTTAGAGAGGAATGCATCAAGTTTGGTCCTGTGGATAATGTCAAG GTTTGTGAAAATCATCCACAGGGTGTCATTTTGGTGAAATTCAAAGATAGAEST: gi|211013609|gb|FL363381.1|FL363381
genomic: CTGATGTTAGAGAGGAATGCATCAAGTTTGGTCCTGTGGATAATGTCAAGgtacacttaa ... ctgcatgcagGTTTGTGAAAATCATCCACAGGGTGTCATTTTGGTGAAATTCAAAGATAGA
EST: CTGATGTTAGAGAGGAATGCATCAAGTTTGGTCCTGTGGATAATGTCAAG GTTTGTGAAAATCATCCACAGGGTGTCATTTTGGTGAAATTCAAAGA-A-AEST: gi|211309996|gb|FL325113.1|FL325113
genomic: CTGATGTTAGAGAGGAATGCATCAAGTTTGGTCCTGTGGATAATGTCAAGgtacacttaa ... ctgcatgcagGTTTGTGAAAATCATCCACAGGGTGTCATTTTGGTGAAATTCAAAGATAGA
EST: CTGATGTTAGAGAGGAATGCATCAAGTTTGGTCCTGTGGATAATGTCAAG GTTTGTGAAAATCATCCACAGGGTGTCATTTTGGTGAAATTCAAAGATAGAEST: gi|32933834|gb|CF038646.1|CF038646
genomic: CTGATGTTAGAGAGGAATGCATCAAGTTTGGTCCTGTGGATAATGTCAAGgtacacttaa ... ctgcatgcagGTTTGTGAAAATCATCCACAGGGTGTCATTTTGGTGAAATTCAAAGATAGA
EST: CTGATGTTAGAGAGGAATGCATCAAGTTTGGTCCTGTGGATAATGTCAAG GTTTGTGAAAATCATCCACGGGGTGTCATTTTGGTGAAATTCAAAGATAGA
genomic: CTGATGTTAGAGAGGAATGCATCAAGTTTGGTCCTGTGGATAATGTCAAGgtacacttaa ... ctgcatgcagGTTTGTGAAAATCATCCACAGGGTGTCATTTTGGTGAAATTCAAAGATAGA
ttttccactaaactgctgcagctacatcgatatgcttattgttttctgcatgcagGTTTGTGAAAATCATCCACAGGGTGTCATTTTGGTGAAATTCAAAGATAGAAAAGATGGTGCCAAATGCATAGAGAAGATGAACGGTAGATG
cactaaa putative branch site (score: 2)
ttgttttct putative PPT
ttattgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattgtcaggaatcaaccataacttgtatactgttcctgttgctgttttccactaaactgctgcagctacatcgatatgcttattgttttctgcatgcagGTTTGTGAAAATCATCCACAGGGTGTCATTTTGGTGAAATTCAAAGATAGAAAAGATGGTGCCAAATGCATAGAGAAGATGAACGGTAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG