1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tactatcctggattttagtcatctgagccacattcagattatggttatttggcagtgacaaattaacactgaaatcatgacaatttgagaatctctccagGTCTTGTAGAAAAAGGTTATTGTCATCATCCTTGGTGGTGGAACAGCGTTCCATGTGGGTATGACGGGACGCGGGCTCTCGGGGAAGCAAGCAGCCTAGG
species | Zea mays |
transcript | GRMZM2G043509_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTGTTAGCCGAGTTCCGG-GCAAGCCTAGAATCAGAAGTTGACACATTAG GTCTTGTAGAAAAAGGTTATTGTCATCATCCTTGGTGGTGGAACAGCGTTCEST: gi|93013839|gb|EB639359.1|EB639359
genomic: CTGTTAGCCGAGTTCCGGTGCAAGCCTAGAATCAGAAGTTGACACATTAGgtatgttaca ... atctctccagGTCTTGTAGAAAAAGGTTATTGTCATCATCCTTGGTGGTGGAACAGCGTTC
EST: CTGTTAGCCGAGTTCCGGTGCAAGCCTAGAATCAGAAGTTGACACATTAA GTCTTGTAGAAAAAGGTTATTGTCTTCATCCTTGGTGGTGGAACAGCGTTCEST: gi|19769774|gb|BQ034495.1|BQ034495
genomic: CTGTTAGCCGAGTTCCGGTGCAAGCCTAGAATCAGAAGTTGACACATTAGgtatgttaca ... atctctccagGTCTTGTAGAAAAAGGTTATTGTCATCATCCTTGGTGGTGGAACAGCGTTC
EST: CTGTTAGCCGAGTTCCGGTGCAAGCCTAGAATCAGAAGTTGACACATTAG GTCTTGTAGAAAAAGGTTATTGTCATCATCCTTGGTGGTGGAACAGCGTTCEST: gi|19822026|gb|BQ048050.1|BQ048050
genomic: CTGTTAGCCGAGTTCCGGTGCAAGCCTAGAATCAGAAGTTGACACATTAGgtatgttaca ... atctctccagGTCTTGTAGAAAAAGGTTATTGTCATCATCCTTGGTGGTGGAACAGCGTTC
EST: CTGTTAGCCGAGTTCCGGTGCAAGCCTAGAATCAGAAGTTGACACATTAG GTCTTGTAGAAAAAGGTTATTGTCATCATCCTTGGTGGTGGAACAGCGTTC
genomic: CTGTTAGCCGAGTTCCGGTGCAAGCCTAGAATCAGAAGTTGACACATTAGgtatgttaca ... atctctccagGTCTTGTAGAAAAAGGTTATTGTCATCATCCTTGGTGGTGGAACAGCGTTC
tatttggcagtgacaaattaacactgaaatcatgacaatttgagaatctctccagGTCTTGTAGAAAAAGGTTATTGTCATCATCCTTGGTGGTGGAACAGCGTTCCATGTGGGTATGACGGGACGCGGGCTCTCGGGGAAGCAAGCAGCCTAGG
aattaac putative branch site (score: 2)
tctctcc putative PPT
acaaattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactatcctggattttagtcatctgagccacattcagattatggttatttggcagtgacaaattaacactgaaatcatgacaatttgagaatctctccagGTCTTGTAGAAAAAGGTTATTGTCATCATCCTTGGTGGTGGAACAGCGTTCCATGTGGGTATGACGGGACGCGGGCTCTCGGGGAAGCAAGCAGCCTAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - cctggat
- - - - - - - - - - - - - - cacattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgaca