1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagtctgccgaaccatattttatacggctttggcctgaccccttgttcattccgcttaacacctaatgacggaaacgtcttgtccctcccagCTGACGGTTGCAGTAGGAATGGGACCGGTGGTGGCTTTCAGGTACTTGAAGAACCTGTATCAGCCTAGCGCCGTTAACATACTCCAGCAGGTCGAGCAGC
species | Zea mays |
transcript | GRMZM2G037335_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CAATCACGTTCCGCCTGTGTAGCCAACCTTCCTACTGGATCTCCATGGCT CTGACGGTTGCAGTAGGAATGGGACCGGTGGTGGCTTTCAGGTACTTGAAGEST: gi|166557136|gb|EG052959.1|EG052959
genomic: CAATCACGTTCCGCCTGTGTAGCCAACCTTCCTACTGGATCTCCATGGCTgtaagtctgc ... tccctcccagCTGACGGTTGCAGTAGGAATGGGACCGGTGGTGGCTTTCAGGTACTTGAAG
EST: CTGGATCTCCATGGCT CTGACGGTTGCAGTAGGAATGGGACCGGTGGTGGCTTTCAGGTACTTGAAGEST: gi|12971716|gb|BG267621.1|BG267621
genomic: CTGGATCTCCATGGCTgtaagtctgc ... tccctcccagCTGACGGTTGCAGTAGGAATGGGACCGGTGGTGGCTTTCAGGTACTTGAAG
EST: CAATCACGTTCCGCCTGTGTAGCCAACCTTCCTACTGGATCTCCATGGCT CTGACGGTTGCAGTAGGAATGGGACCGGTGGTGGCTTTCAGGTACTTGAAG
genomic: CAATCACGTTCCGCCTGTGTAGCCAACCTTCCTACTGGATCTCCATGGCTgtaagtctgc ... tccctcccagCTGACGGTTGCAGTAGGAATGGGACCGGTGGTGGCTTTCAGGTACTTGAAG
accccttgttcattccgcttaacacctaatgacggaaacgtcttgtccctcccagCTGACGGTTGCAGTAGGAATGGGACCGGTGGTGGCTTTCAGGTACTTGAAGAACCTGTATCAGCCTAGCGCCGTTAACATACTCCAGCAGGTCGAGCAGC
acctaat putative branch site (score: 33)
cgtcttgtccctccc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtctgccgaaccatattttatacggctttggcctgaccccttgttcattccgcttaacacctaatgacggaaacgtcttgtccctcccagCTGACGGTTGCAGTAGGAATGGGACCGGTGGTGGCTTTCAGGTACTTGAAGAACCTGTATCAGCCTAGCGCCGTTAACATACTCCAGCAGGTCGAGCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG