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gcgagcttaactgacccagagcacagaggcgtttctgtaccatttagcatgctgctttgcttaactatttcaccatgatagCTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGCAGTCTTGTGTCCATGCCTGACATTGTGTTCACCATTGGAGGCAAGAAGT
species | Zea mays |
transcript | GRMZM2G035636_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AACTTGCCCAGAACAAGACACAGGAGCTCATCCTGAACTACATTAATCAG CTTTGCGAGCGTCTTCCGAGTCCAATGGGAGAATCAGCCGTGGACTGTGGCEST: gi|32850229|gb|CD989910.1|CD989910
genomic: AACTTGCCCAGAACAAGACGCAGGAGCTCATCCTGAACTACATTAATCAGgcgagcttaa ... accatgatagCTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGC
EST: AACTTGCCCAGAACAAGACACAGGAGCTCATCCTGAACTACATTAATCAG CTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGCEST: gi|5740635|gb|AI948325.1|AI948325
genomic: AACTTGCCCAGAACAAGACGCAGGAGCTCATCCTGAACTACATTAATCAGgcgagcttaa ... accatgatagCTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGC
EST: AACTTGCCCAGAACAAGACACAGGAGCTCATCCTGAACTACATTAATCAG CTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGCEST: gi|32835904|gb|CD975582.1|CD975582
genomic: AACTTGCCCAGAACAAGACGCAGGAGCTCATCCTGAACTACATTAATCAGgcgagcttaa ... accatgatagCTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGC
EST: AACTTGCCCAGAACAAGACACAGGAGCTCATCCTGAACTACATTAATCAG CTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGCEST: gi|33092153|gb|CF052147.1|CF052147
genomic: AACTTGCCCAGAACAAGACGCAGGAGCTCATCCTGAACTACATTAATCAGgcgagcttaa ... accatgatagCTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGC
EST: AACTTGCCCAGAACAAGACACAGGAGCTCATCCTGAACTACATTAATCAG CTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGCEST: gi|32850207|gb|CD989888.1|CD989888
genomic: AACTTGCCCAGAACAAGACGCAGGAGCTCATCCTGAACTACATTAATCAGgcgagcttaa ... accatgatagCTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGC
EST: AACTTGCCCAGAACAAGACACAGGAGCTCATCCTGAACTACATTAATCAG CTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGCEST: gi|32850559|gb|CD990240.1|CD990240
genomic: AACTTGCCCAGAACAAGACGCAGGAGCTCATCCTGAACTACATTAATCAGgcgagcttaa ... accatgatagCTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGC
EST: AACTTGCCCAGAACAAGACACAGGAGCTCATCCTGAACTACATTAATCAG CTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGCEST: gi|194716945|gb|FK934104.1|FK934104
genomic: AACTTGCCCAGAACAAGACGCAGGAGCTCATCCTGAACTACATTAATCAGgcgagcttaa ... accatgatagCTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGC
EST: AACTTGCCCAGAACAAGACACAGGAGCTCATCCTGAACTACATTAATCAG CTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGCEST: gi|8576947|gb|BE129584.1|BE129584
genomic: AACTTGCCCAGAACAAGACGCAGGAGCTCATCCTGAACTACATTAATCAGgcgagcttaa ... accatgatagCTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGC
EST: AACTTGCCCAGAACAAGACTCAGGAGCTCATCCTGAACTACATTAATCAG CTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGCEST: gi|7135183|gb|AW497972.1|AW497972
genomic: AACTTGCCCAGAACAAGACGCAGGAGCTCATCCTGAACTACATTAATCAGgcgagcttaa ... accatgatagCTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGC
EST: AACTTGCCCAGAACAAGACACAGGAGCTCATCCTGAACTACATTAATCAG CTTTGCGAGCGTCTTCCGAGTCCAATGGGAGAATCAGCCGTGGACTGTGGCEST: gi|32850704|gb|CD990385.1|CD990385
genomic: AACTTGCCCAGAACAAGACGCAGGAGCTCATCCTGAACTACATTAATCAGgcgagcttaa ... accatgatagCTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGC
EST: AACTTGCCCAGAACAAGACACAGGAGCTCATCCTGAACTACATTAATCAG CTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGCEST: gi|211224721|gb|FL222439.1|FL222439
genomic: AACTTGCCCAGAACAAGACGCAGGAGCTCATCCTGAACTACATTAATCAGgcgagcttaa ... accatgatagCTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGC
EST: AACTTGCCCAGAACAAGACACAGGAGCTCATCCTGAACTACATTAATCAG CTTTGCGAGCGTCTTCCGAGTCCAATGGGAGAATCAGCCGTGGACTGTGGC
genomic: AACTTGCCCAGAACAAGACGCAGGAGCTCATCCTGAACTACATTAATCAGgcgagcttaa ... accatgatagCTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGC
aggcgtttctgtaccatttagcatgctgctttgcttaactatttcaccatgatagCTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGCAGTCTTGTGTCCATGCCTGACATTGTGTTCACCATTGGAGGCAAGAAGT
gcttaac putative branch site (score: 3)
tttcacc putative PPT
ttaactattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcgagcttaactgacccagagcacagaggcgtttctgtaccatttagcatgctgctttgcttaactatttcaccatgatagCTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGCAGTCTTGTGTCCATGCCTGACATTGTGTTCACCATTGGAGGCAAGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT