1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...ttgatcccccacttgtatgcagctatctgaccttagatgcatttaaaatttctctatgcactgataggctacttacgacaatctaatgttgtaaatgcagGAGCATGCCAACATCAGCTGCCCTTGATGTTGTTGCAAAGAATTTGAATCTCAAGTTCTTTGAG
species | Zea mays |
transcript | GRMZM2G023289_T03 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GCTGTTCAATCAATTCCTTACTTTGCTTCTGGCCTGAAGGGAGTTGCCAG GAGCATGCCAACATCAGCTGCCCTTGATGTTGTTGCAAAGAATTTGAATCTEST: gi|67020139|gb|CO448888.1|CO448888
genomic: GCTGTTCAATCAATTCCTTACTTTGCTTCTGGCCTGAAGGGAGTTGCCAGgtaaaaagct ... gtaaatgcagGAGCATGCCAACATCAGCTGCCCTTGATGTTGTTGCAAAGAATTTGAATCT
EST: GGGAGTTTCCAG GAGCATGCCAACATCAGCTGCCCTTGATGTTGTTGCAAAGAATTTGAATCT
genomic: GGGAGTTGCCAGgtaaaaagct ... gtaaatgcagGAGCATGCCAACATCAGCTGCCCTTGATGTTGTTGCAAAGAATTTGAATCT
aaatttctctatgcactgataggctacttacgacaatctaatgttgtaaatgcagGAGCATGCCAACATCAGCTGCCCTTGATGTTGTTGCAAAGAATTTGAATCTCAAGTTCTTTGAG
aatctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgatcccccacttgtatgcagctatctgaccttagatgcatttaaaatttctctatgcactgataggctacttacgacaatctaatgttgtaaatgcagGAGCATGCCAACATCAGCTGCCCTTGATGTTGTTGCAAAGAATTTGAATCTCAAGTTCTTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - -cccccac
- - - - - - -tgtatgc
- - - - - - - - - - - - - - - - - - atgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggctact