1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...ccaactaggcttaataatcctactgtttgtttttttcttgcctggtcaatttttggttaatgtatattggctcacataaataacctagtattctttgcagATTATTTCCATTGTCAAGAGTAGAAATACAAAGGACAAGACCTTTGGAAATTTGGCCTTTGCGTGTGGATATGTCATGCTATTAGTTACAAATCAG
species | Zea mays |
transcript | AC210013.4_FGT008 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATGGACAGGATTGTCCCCGTCCAATCTCTTGTTGTCTATTTGCTAACAAG ATTATTTCCATTGTCAAGAGTAGAAATACAAAGGACAAGACCTTTGGAAAT
genomic: ATGGACAGGATTGTCCCCGTCCAATCTCTTGTTGTCTATTTGCTAACAAGgtagatactt ... ttctttgcagATTATTTCCATTGTCAAGAGTAGAAATACAAAGGACAAGACCTTTGGAAAT
tcaatttttggttaatgtatattggctcacataaataacctagtattctttgcagATTATTTCCATTGTCAAGAGTAGAAATACAAAGGACAAGACCTTTGGAAATTTGGCCTTTGCGTGTGGATATGTCATGCTATTAGTTACAAATCAG
aaataac putative branch site (score: 24)
tattcttt putative PPT
ttaatgtatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaactaggcttaataatcctactgtttgtttttttcttgcctggtcaatttttggttaatgtatattggctcacataaataacctagtattctttgcagATTATTTCCATTGTCAAGAGTAGAAATACAAAGGACAAGACCTTTGGAAATTTGGCCTTTGCGTGTGGATATGTCATGCTATTAGTTACAAATCAG
ccaacta
- - - - - - - - - cctactg
- - - - - - - - - - - - - -tgttttt
- - - - - - - - - - - - - - - - - ttcttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataac