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...taggattgctggaagaaaaaggagaaagactgtttacttagccttttcttgctgctgatttttttctgttttcatttcattattgtttttttgtgtgcagCTGCTTATGTTTCTTCAATTTGGAGGATATACTCTA
species | Zea mays |
transcript | GRMZM2G702159_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTGGGCACTGGAAACTCAATCATATTGTCTATTCCTTTGTAGCTGTCCAG CTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAEST: gi|91875691|gb|EB405648.1|EB405648
genomic: TTGGGCACTGGAAACTCAATCATATTGTCTATTCCTTTGTAGCTGTCCAGgtattctctc ... ttgtgtgcagCTGCTTATGTTTCTTCAATTTGGAGGATATACTCTA
EST: TCCTTTGTAGCTGTCCAG CTGCTTATGTTTCTTCAATTGGGAGGATATACTCTAEST: gi|33285753|gb|CF075548.1|CF075548
genomic: TCCTTTGTAGCTGTCCAGgtattctctc ... ttgtgtgcagCTGCTTATGTTTCTTCAATTTGGAGGATATACTCTA
EST: TTGGGCACTGGAAACTCAATCATATTGTCTATTCCTTTGTAGCTGTCCAG CTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAEST: gi|28188199|gb|CB179809.1|CB179809
genomic: TTGGGCACTGGAAACTCAATCATATTGTCTATTCCTTTGTAGCTGTCCAGgtattctctc ... ttgtgtgcagCTGCTTATGTTTCTTCAATTTGGAGGATATACTCTA
EST: TGGGCACTGGAAACTCAATCATATTGTCTATTCCTTTGTAGCCTGTCCAG CTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAEST: gi|33770597|gb|CF272891.1|CF272891
genomic: TGGGCACTGGAAACTCAATCATATTGTCTATTCCTTTGTAGC-TGTCCAGgtattctctc ... ttgtgtgcagCTGCTTATGTTTCTTCAATTTGGAGGATATACTCTA
EST: TTGGGCACTGGAAACTCAATCATATTGTCTATTCCTTTGTAGCTGTCCAG CTGCTTATGTTTCTTCAATTTGGAGGATATACTCTA
genomic: TTGGGCACTGGAAACTCAATCATATTGTCTATTCCTTTGTAGCTGTCCAGgtattctctc ... ttgtgtgcagCTGCTTATGTTTCTTCAATTTGGAGGATATACTCTA
ttcttgctgctgatttttttctgttttcatttcattattgtttttttgtgtgcagCTGCTTATGTTTCTTCAATTTGGAGGATATACTCTA
tgctgat putative branch site (score: 23)
tttttttctgttttca CT-rich tract
atttttttctgttttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taggattgctggaagaaaaaggagaaagactgtttacttagccttttcttgctgctgatttttttctgttttcatttcattattgtttttttgtgtgcagCTGCTTATGTTTCTTCAATTTGGAGGATATACTCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - attgctg
- - - - - - aagaaaa
- - - - - - - - - - - - - - actgttt
- - - - - - - - - - - - - - - - - - - - - - - - - gctgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttttt