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...tcccttgaacatatctggtgacagtgaaatttcacccatgggtgagatattgtgttttatggcatataaaaaaacactgaacagtttttcttttgcccagGCAAAAAGTGAGTACCTGGAGGAATCAAAGCTTGTACTCCCTGTCCAAATCAATGGAAAGACCAGGGGTACAATCCTTGTTGACAAAGCGTGCTCTGAGG
species | Zea mays |
transcript | GRMZM2G566786_T03 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GGTTTCGCCTCGGACATCCACAATCATTGGCCTATGAACAGTTTCCAGAG GCAAAAAGTGAGTACCTGGAGGAATCAAAGCTTGTACTCCCTGTCCAAATCEST: gi|26456635|gb|CA828218.1|CA828218
genomic: GGTTTCGCCTCGGACATCCACAATCATTGGCCTATGAACAGTTTCCAGAGgtatcctcaa ... ttttgcccagGCAAAAAGTGAGTACCTGGAGGAATCAAAGCTTGTACTCCCTGTCCAAATC
EST: GGTTTCGCCTCGGACATCCACAATCATTGGCCTATGAACAGTTTCCAGAG GCAAAAAGTGAGTACCTGGAGGAATCAAAGCTTGTACTC
genomic: GGTTTCGCCTCGGACATCCACAATCATTGGCCTATGAACAGTTTCCAGAGgtatcctcaa ... ttttgcccagGCAAAAAGTGAGTACCTGGAGGAATCAAAGCTTGTACTC
gatattgtgttttatggcatataaaaaaacactgaacagtttttcttttgcccagGCAAAAAGTGAGTACCTGGAGGAATCAAAGCTTGTACTCCCTGTCCAAATCAATGGAAAGACCAGGGGTACAATCCTTGTTGACAAAGCGTGCTCTGAGG
tttttcttttgccc CT-rich tract
atataaaaaaacact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcccttgaacatatctggtgacagtgaaatttcacccatgggtgagatattgtgttttatggcatataaaaaaacactgaacagtttttcttttgcccagGCAAAAAGTGAGTACCTGGAGGAATCAAAGCTTGTACTCCCTGTCCAAATCAATGGAAAGACCAGGGGTACAATCCTTGTTGACAAAGCGTGCTCTGAGG
- - - gaacata
- - - - - - -tctggtg
- - - - - - - - - - - - - - - - - -ccatggg
- - - - - - - - - - - - - - - - - - - - - - - - - tgtgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactgaa