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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacgagaaattctctggtctgcaaaactgagggcaaacatgctatattatggagccaatcacaccctaagatgacaatgaattctttcaattccagGAGTCAAGGGTGTTGTTCAAGGCATGTTCCTGAATAGAGAATGCAGTGCCTGTTATGATTGCCCCAGAT

Basic information

species Zea mays
transcript GRMZM2G468693_T01
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32826925|gb|CD966603.1|CD966603
EST:     TAATGAGAGGAGAGTATCATCTTCTAAG                         GAGTCAAGGGTGTTGTTCAAGGCATGTTCCTGAATAGAGAATGCAGTGCCT
genomic: TAATGAGAGGAGAGTATCATCTTCTAAGgtaacgagaa ... tcaattccagGAGTCAAGGGTGTTGTTCAAGGCATGTTCCTGAATAGAGAATGCAGTGCCT
EST: gi|37384276|gb|CF629200.1|CF629200
EST:     CATCCTGAGATGTACAATCCTTTAATGAGAGGAGAGTATCATCTTCTAAG                         GAGTCAAGGGTGTTGTTCAAGGCATGTTCCTGAATAGAGAATGCAGTGCCT
genomic: CATCCTGAGATGTACAATCCTTTAATGAGAGGAGAGTATCATCTTCTAAGgtaacgagaa ... tcaattccagGAGTCAAGGGTGTTGTTCAAGGCATGTTCCTGAATAGAGAATGCAGTGCCT
EST: gi|166433548|gb|EG132026.1|EG132026
EST:     CATCCTGAGATGTACAATCCTTTAATGAGAGGAGAGTATCATCTTCTAAG                         GAGTCAAGGGTGTTGTTCAAGGCATG
genomic: CATCCTGAGATGTACAATCCTTTAATGAGAGGAGAGTATCATCTTCTAAGgtaacgagaa ... tcaattccagGAGTCAAGGGTGTTGTTCAAGGCATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatattatggagccaatcacaccctaagatgacaatgaattctttcaattccagGAGTCAAGGGTGTTGTTCAAGGCATGTTCCTGAATAGAGAATGCAGTGCCTGTTATGATTGCCCCAGAT
                                        ttctttc  CT-rich tract
                                  aatgaatt  TA-rich tract