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gtaggttgatttcactgaattgtttgttgtttacttaggtttagttttttaaggctgtaaccatttctttttctctacagCGCGAGTTTTATTTGGAAGGAGGAGCCATGGTTTTGGCTGATGGTGGAGTAGTTTGTATCGATGAATTTGACAAGATGCGACCTGAAGACAG
species | Zea mays |
transcript | GRMZM2G450055_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GATCATCTGCAGCTGGTCTTACAGCATCTGTAACTCGGGATAGTAGCTCG CGCGAGTTTTATTTGGAAGGAGGAGCCATGGTTTTGGCTGATGGTGGAGTAEST: gi|22473461|gb|BU037941.1|BU037941
genomic: GTTCATCTGCAGCTGGTCTTACAGCATCTGTAACTCGGGATAGTAGCTCGgtaggttgat ... ttctctacagCGCGAGTTTTATTTGGAAGGAGGAGCCATGGTTTTGGCTGATGGTGGAGTA
EST: GATCATCTGCAGCTGGTCTTACAGCATCTGTAACTCGGGATAGTAGCTCG CGCGAGTTTTATTTGGAAGGAGGAGCCATGGTTTTGGCTGATGGTGGAGTAEST: gi|22490113|gb|BU050036.1|BU050036
genomic: GTTCATCTGCAGCTGGTCTTACAGCATCTGTAACTCGGGATAGTAGCTCGgtaggttgat ... ttctctacagCGCGAGTTTTATTTGGAAGGAGGAGCCATGGTTTTGGCTGATGGTGGAGTA
EST: GATCGTCTGCAGCTGGTCTTACAGCATCTGTAACTCGGGATAGTAGCTCG CGCGAGTTTTATTTGGAAGGAGGAGCCATGGTTTTGGCTGATGGTGGAGTAEST: gi|22473134|gb|BU037614.1|BU037614
genomic: GTTCATCTGCAGCTGGTCTTACAGCATCTGTAACTCGGGATAGTAGCTCGgtaggttgat ... ttctctacagCGCGAGTTTTATTTGGAAGGAGGAGCCATGGTTTTGGCTGATGGTGGAGTA
EST: GATCATCTGCAGCTGGTCTTACAGCATCTGTAACTCGGGATAGTAGCTCG CGCGAGTTTTATTTGGAAGGAGGAGCCATGGTTTTGGCTGATGGTGGAGTAEST: gi|211539705|gb|FK958373.1|FK958373
genomic: GTTCATCTGCAGCTGGTCTTACAGCATCTGTAACTCGGGATAGTAGCTCGgtaggttgat ... ttctctacagCGCGAGTTTTATTTGGAAGGAGGAGCCATGGTTTTGGCTGATGGTGGAGTA
EST: GTTCATCTGCAGCTGGTCTTACAGCATCTGTAACTCGGGATAGTAGCTCG CGCGAGTTTTATTTGGAAGGAGGAGCCATGGTTTTGGCTGATGGTGGAGTAEST: gi|211542714|gb|FK958381.1|FK958381
genomic: GTTCATCTGCAGCTGGTCTTACAGCATCTGTAACTCGGGATAGTAGCTCGgtaggttgat ... ttctctacagCGCGAGTTTTATTTGGAAGGAGGAGCCATGGTTTTGGCTGATGGTGGAGTA
EST: GTTCATCTGCAGCTGGTCTTACAGCATCTGTAACTCGGGATAGTAGCTCG CGCGAGTTTTATTTGGAAGGAGGAGCCATGGTTTTGGCTGATGGTGGAGTAEST: gi|21760083|gb|BQ635624.1|BQ635624
genomic: GTTCATCTGCAGCTGGTCTTACAGCATCTGTAACTCGGGATAGTAGCTCGgtaggttgat ... ttctctacagCGCGAGTTTTATTTGGAAGGAGGAGCCATGGTTTTGGCTGATGGTGGAGTA
EST: GATCATCTGCAGCTGGTCTTACAGCATCTGTAACTCGGGATAGTAGCTCG CGCGAGTTTTATTTGGAAGGAGGAGCCATGGTTTTGGCTGATGGTGGAGTAEST: gi|211542711|gb|FK958378.1|FK958378
genomic: GTTCATCTGCAGCTGGTCTTACAGCATCTGTAACTCGGGATAGTAGCTCGgtaggttgat ... ttctctacagCGCGAGTTTTATTTGGAAGGAGGAGCCATGGTTTTGGCTGATGGTGGAGTA
EST: GTTCATCTGCAGCTGGTCTTACAGCATCTGTAACTCGGGATAGTAGCTCG CGCGAGTTTTATTTGGAAGGAGGAGCCATGGTTTTGGCTGATGGTGGAGTAEST: gi|211542715|gb|FK958382.1|FK958382
genomic: GTTCATCTGCAGCTGGTCTTACAGCATCTGTAACTCGGGATAGTAGCTCGgtaggttgat ... ttctctacagCGCGAGTTTTATTTGGAAGGAGGAGCCATGGTTTTGGCTGATGGTGGAGTA
EST: GATCATCTGCAGCTGGTCTTACAGCATCTGTAACTCGGGATAGTAGCTCG CGCGAGTTTTATTTGGAAGGAGGAGCCATGGTTTTGGCTGATGGTGGAGTAEST: gi|211539704|gb|FK958372.1|FK958372
genomic: GTTCATCTGCAGCTGGTCTTACAGCATCTGTAACTCGGGATAGTAGCTCGgtaggttgat ... ttctctacagCGCGAGTTTTATTTGGAAGGAGGAGCCATGGTTTTGGCTGATGGTGGAGTA
EST: GTTCATCTGCAGCTGGTCTTACAGCATCTGTAACTCGGGATAGTAGCTCG CGCGAGTTTTATTTGGAAGGAGGAGCCATGGTTTTGGCTGATGGTGGAGTAEST: gi|22545894|gb|BU098253.1|BU098253
genomic: GTTCATCTGCAGCTGGTCTTACAGCATCTGTAACTCGGGATAGTAGCTCGgtaggttgat ... ttctctacagCGCGAGTTTTATTTGGAAGGAGGAGCCATGGTTTTGGCTGATGGTGGAGTA
EST: GATCATCTGCAGCTGGTCTTACAGCATCTGTAACTCGGGATAGTAGCTCG CGCGAGTTTTATTTGGAAGGAGGAGCCATGGTTTTGGCTGATGGTGGAGTAEST: gi|67031386|gb|CO460135.1|CO460135
genomic: GTTCATCTGCAGCTGGTCTTACAGCATCTGTAACTCGGGATAGTAGCTCGgtaggttgat ... ttctctacagCGCGAGTTTTATTTGGAAGGAGGAGCCATGGTTTTGGCTGATGGTGGAGTA
EST: GATCATCTGCAGCTGGTCTTACAGCATCTGTAACTCGGGATAGTAGCTCG CGCGAGTTTTATTTGGAAGGAGGAGCCATGGTTTTGGCTGATGGTGGAGTAEST: gi|211539703|gb|FK958371.1|FK958371
genomic: GTTCATCTGCAGCTGGTCTTACAGCATCTGTAACTCGGGATAGTAGCTCGgtaggttgat ... ttctctacagCGCGAGTTTTATTTGGAAGGAGGAGCCATGGTTTTGGCTGATGGTGGAGTA
EST: GTTCATCTGCAGCTGGTCTTACAGCATCTGTAACTCGGGATAGTAGCTCG CGCGAGTTTTATTTGGAAGGAGGAGCCATGGTTTTGGCTGATGGTGGAGTA
genomic: GTTCATCTGCAGCTGGTCTTACAGCATCTGTAACTCGGGATAGTAGCTCGgtaggttgat ... ttctctacagCGCGAGTTTTATTTGGAAGGAGGAGCCATGGTTTTGGCTGATGGTGGAGTA
gttgtttacttaggtttagttttttaaggctgtaaccatttctttttctctacagCGCGAGTTTTATTTGGAAGGAGGAGCCATGGTTTTGGCTGATGGTGGAGTAGTTTGTATCGATGAATTTGACAAGATGCGACCTGAAGACAG
ctgtaac putative branch site (score: 20)
ccatttctttttctct CT-rich tract
tttagttttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggttgatttcactgaattgtttgttgtttacttaggtttagttttttaaggctgtaaccatttctttttctctacagCGCGAGTTTTATTTGGAAGGAGGAGCCATGGTTTTGGCTGATGGTGGAGTAGTTTGTATCGATGAATTTGACAAGATGCGACCTGAAGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA