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gtacatccacatctccattgagccaaaaatattttacgtgtattttcatgtttccacacaagaacagaaaggggctaaaatatttttcctttttgtcagGATTGTTGCTTGATCCCAGAATCACCGTTCTATTTGGAAGGCGAAGGCGGACTTTTTAGATACATAGAAAAACGTTTGAAGGACAATGGTCATATGGTTA
species | Zea mays |
transcript | GRMZM2G443985_T04 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTG GATTGTTGCTTGATCCCAGAATCACCGTTCTATTTGGAAGGCGAAGGCGGAEST: gi|6095550|gb|AW120217.1|AW120217
genomic: GTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTGgtacatccac ... tttttgtcagGATTGTTGCTTGATCCCAGAATCACCGTTCTATTTGGAAGGCGAAGGCGGA
EST: GGCTAGCAGGGACGTG GATTGTTGCTTGATCCCAGAATCACCGTTCTATTTGGAAGGCGAAGGCGGAEST: gi|32938968|gb|CF043787.1|CF043787
genomic: GGCTAGCAGGGACGTGgtacatccac ... tttttgtcagGATTGTTGCTTGATCCCAGAATCACCGTTCTATTTGGAAGGCGAAGGCGGA
EST: GTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTG GATTGTTGCTTGATCCCAGAATCACCGTTCTATTTGGAAGGCGAAGGCGGAEST: gi|488227|gb|T18808.1|T18808
genomic: GTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTGgtacatccac ... tttttgtcagGATTGTTGCTTGATCCCAGAATCACCGTTCTATTTGGAAGGCGAAGGCGGA
EST: GTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTG GATTGTTGCTTGATCCCAGAATCACCGTTCTATTTGGAAGGCGAAGGCG-AEST: gi|32939806|gb|CF044625.1|CF044625
genomic: GTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTGgtacatccac ... tttttgtcagGATTGTTGCTTGATCCCAGAATCACCGTTCTATTTGGAAGGCGAAGGCGGA
EST: GTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTG GATTGTTACTTGATCCCAGAATCACCGTTCTATTTGGAAGGCGAAGGCGGAEST: gi|32939493|gb|CF044312.1|CF044312
genomic: GTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTGgtacatccac ... tttttgtcagGATTGTTGCTTGATCCCAGAATCACCGTTCTATTTGGAAGGCGAAGGCGGA
EST: GTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTG GATTGTTGCTTGATCCCAGAATCACCGTTCTATTTGGAAGGCGAAGGCGGAEST: gi|76921243|gb|DV168509.1|DV168509
genomic: GTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTGgtacatccac ... tttttgtcagGATTGTTGCTTGATCCCAGAATCACCGTTCTATTTGGAAGGCGAAGGCGGA
EST: GTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTG GATTGTTGCTTGATCCCAGAATCACCGTTCTATTTGGAAGGCGAAGGCGGAEST: gi|211132969|gb|FL170874.1|FL170874
genomic: GTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTGgtacatccac ... tttttgtcagGATTGTTGCTTGATCCCAGAATCACCGTTCTATTTGGAAGGCGAAGGCGGA
EST: GTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTG GATTGTTGCTTGATCCCAGAATCACCATTCTA
genomic: GTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTGgtacatccac ... tttttgtcagGATTGTTGCTTGATCCCAGAATCACCGTTCTA
ttcatgtttccacacaagaacagaaaggggctaaaatatttttcctttttgtcagGATTGTTGCTTGATCCCAGAATCACCGTTCTATTTGGAAGGCGAAGGCGGACTTTTTAGATACATAGAAAAACGTTTGAAGGACAATGGTCATATGGTTA
ggctaaa putative branch site (score: 340)
tatttttcctttttgt CT-rich tract
taaaatatttttcctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatccacatctccattgagccaaaaatattttacgtgtattttcatgtttccacacaagaacagaaaggggctaaaatatttttcctttttgtcagGATTGTTGCTTGATCCCAGAATCACCGTTCTATTTGGAAGGCGAAGGCGGACTTTTTAGATACATAGAAAAACGTTTGAAGGACAATGGTCATATGGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG