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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcttatttactgctgaaacttctaatatttaattgcagtttttcaaaacttgctgttgtttttttgattcgttaattctgatgactaatgactgctcctgtgttccatgacttaccatttggtgtataaatgagtatgttgctaacttgtactctggccgacatcatatcatgcagGAATTCAGCAAATATGACCGACAAATTGCCAAATCCATAAGTAAACTTATGCCAACTACTGATAGTGTCAG

Basic information

species Zea mays
transcript GRMZM2G417217_T02
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G417217_T03 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os02g38250.1 (Oryza sativa), 3'ss of exon 8
gtcttatttactgctgaaacttctaatatttaattgcagtttttcaaaacttgctgttgtttttttgattcgttaattctgatgactaatgactgctcctgtgttccatgacttaccatttggtgtataaatgagtat-gttgctaacttgtactctggccgacatcat----atcatgcagGAATTCAGCAAATATGACCGACAAATTGCCAAATCCATAAGTAAACTTATGCCAACTACTGATAGTGTCAG
                            |  || ||||  |||  | || ||||||    ||| ||| ||    | |  |||||| | |||    | |   || |    |   |    ||||   |||  ||||| || || |  | |||||| | || |    ||  |    ||  ||||||| ||||||| |||||||||||||||||| ||||| ||  ||||||||||||| |||||||| ||||| | 
------------------------gtcttccaactgca--tttgtacaatttgctgcaaatttgttgttttaacattgatgatgaatgatggtcaccctgctggtttcagttct----tttgccatatggatgagaattgtggtaagcttgtatt-tgactattattgtttttattgtgcagGAGTTCAGCAGATATGACCGACAAATTGCAAAATCTATTGGTAAACTTATGCCGACTACTGACAGTGTAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtataaatgagtatgttgctaacttgtactctggccgacatcatatcatgcagGAATTCAGCAAATATGACCGACAAATTGCCAAATCCATAAGTAAACTTATGCCAACTACTGATAGTGTCAG
                  tgctaac  putative branch site (score: 1)
     taaatga  TA-rich tract