1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tctgcccgcattgctcttttattttttttctaatgcatacctcttcatagaatgtatcatcaactctaaaccaaatctggctgggtgtaacatttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGCATCACTGTCGTACTGAAGAACGCGATAATTGCTGATGGATTGGTCATAT
species | Zea mays |
transcript | GRMZM2G391936_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA GGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGCEST: gi|13236975|gb|BG354989.1|BG354989
genomic: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAAgtaagttgat ... catttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGC
EST: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA GGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGCEST: gi|71324302|gb|DR798853.1|DR798853
genomic: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAAgtaagttgat ... catttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGC
EST: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA GGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGCEST: gi|27753904|gb|BM378096.1|BM378096
genomic: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAAgtaagttgat ... catttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGC
EST: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA GGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGCEST: gi|24763417|gb|CA398592.1|CA398592
genomic: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAAgtaagttgat ... catttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGC
EST: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA GGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGCEST: gi|93281647|gb|EB673911.1|EB673911
genomic: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAAgtaagttgat ... catttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGC
EST: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA GGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGCEST: gi|211232745|gb|FL322840.1|FL322840
genomic: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAAgtaagttgat ... catttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGC
EST: AGACAAGAATGCGAGGATAGGGAAAGAAAGTGGTAATCTCCAACTCTGAA GGTGTAGATGAAGCTGATAEST: gi|110195335|gb|EC877232.1|EC877232
genomic: AGACAAGAATGCGAGGATAGGGAA-GAAAGTGGTAATCTCCAACTCTGAAgtaagttgat ... catttcacagGGTGTAGATGAAGCTGATA
EST: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA GGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGCEST: gi|13558450|gb|BG549806.1|BG549806
genomic: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAAgtaagttgat ... catttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGC
EST: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA GGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGCEST: gi|13126504|gb|BG317074.1|BG317074
genomic: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAAgtaagttgat ... catttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGC
EST: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA GGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGCEST: gi|211470047|gb|FL442813.1|FL442813
genomic: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAAgtaagttgat ... catttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGC
EST: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA GGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGCEST: gi|18178292|gb|BM379502.1|BM379502
genomic: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAAgtaagttgat ... catttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGC
EST: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA GGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGCEST: gi|38688212|gb|CK145243.1|CK145243
genomic: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAAgtaagttgat ... catttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGC
EST: TAGACCAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA GGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGCEST: gi|71429962|gb|DR811012.1|DR811012
genomic: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAAgtaagttgat ... catttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGC
EST: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA GGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGCEST: gi|71323466|gb|DR798382.1|DR798382
genomic: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAAgtaagttgat ... catttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGC
EST: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA GGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGCEST: gi|91874077|gb|EB404034.1|EB404034
genomic: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAAgtaagttgat ... catttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGC
EST: TTGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA GGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGCEST: gi|89763297|gb|DY690558.1|DY690558
genomic: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAAgtaagttgat ... catttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGC
EST: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA GGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGCEST: gi|31363279|gb|CD447636.1|CD447636
genomic: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAAgtaagttgat ... catttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGC
EST: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA GGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTTTACATTCGATCTGGCEST: gi|32850355|gb|CD990036.1|CD990036
genomic: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAAgtaagttgat ... catttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGC
EST: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA GGTGTAGAGGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGCEST: gi|16377759|gb|BI992107.1|BI992107
genomic: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAAgtaagttgat ... catttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGC
EST: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA GGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGCEST: gi|31348918|gb|CD433275.1|CD433275
genomic: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAAgtaagttgat ... catttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGC
EST: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA GGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGCEST: gi|12967897|gb|BG264844.1|BG264844
genomic: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAAgtaagttgat ... catttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGC
EST: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA GGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGCEST: gi|50335821|gb|CO530947.1|CO530947
genomic: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAAgtaagttgat ... catttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGC
EST: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA GGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGCEST: gi|31362917|gb|CD447274.1|CD447274
genomic: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAAgtaagttgat ... catttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGC
EST: TACACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA GGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGCEST: gi|16378153|gb|BI992295.1|BI992295
genomic: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAAgtaagttgat ... catttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGC
EST: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA GGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGCEST: gi|78103575|gb|DV522003.1|DV522003
genomic: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAAgtaagttgat ... catttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGC
EST: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA GGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGC
genomic: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAAgtaagttgat ... catttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGC
catagaatgtatcatcaactctaaaccaaatctggctgggtgtaacatttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGCATCACTGTCGTACTGAAGAACGCGATAATTGCTGATGGATTGGTCATAT
gtgtaac putative branch site (score: 3)
taacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgcccgcattgctcttttattttttttctaatgcatacctcttcatagaatgtatcatcaactctaaaccaaatctggctgggtgtaacatttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGCATCACTGTCGTACTGAAGAACGCGATAATTGCTGATGGATTGGTCATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA