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...atttatcattatagactagtaaaatatctattcgtggactactttagtaggtcaggtgatttcttcattgtaatcaaattgccttttactcttgtggcagATACTTCACTTTTTGGGAAATGAAGGCCCCAAAACATCAGATCCCAGTAAATACATACGCTATATATACAATAGGGTGATACTTGAAAATGCTACAGTTC
species | Zea mays |
transcript | GRMZM2G178618_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTTATGCGAATTCATAGAAGCACTGTGAATTCACCTATTTGTCCACTCAG AT-CTTC-CTTTTTGGGAAATGAAGGCCCCAAAACATCAGATCCCAGTAAAEST: gi|18648972|gb|BM497791.1|BM497791
genomic: CTTATGCGAATTCATAGAAG-ACTGTGAATTCACCTATTTGTCCACTCAGgtaatcaact ... cttgtggcagATACTTCACTTTTTGGGAAATGAAGGCCCCAAAACATCAGATCCCAGTAAA
EST: ACTTATGCGAATTCATAGAAGACTGTGAATTCACCTATTTGTCCACTCAG ATACTTCACTTTTTGGGAAATGAAGGCCCCAAAACATCAGATCCCAGTAAAEST: gi|18654638|gb|BM499443.1|BM499443
genomic: ACTTATGCGAATTCATAGAAGACTGTGAATTCACCTATTTGTCCACTCAGgtaatcaact ... cttgtggcagATACTTCACTTTTTGGGAAATGAAGGCCCCAAAACATCAGATCCCAGTAAA
EST: ACTTATGCGAATTCATAGAAGACTGTGAATTCACCTATTTGTCC-CTCAG AT-CTTC-CTTTTTGGGAAATGAAGGCCCCAAAACATCAGATCCEST: gi|6564183|gb|AW231805.1|AW231805
genomic: ACTTATGCGAATTCATAGAAGACTGTGAATTCACCTATTTGTCCACTCAGgtaatcaact ... cttgtggcagATACTTCACTTTTTGGGAAATGAAGGCCCCAAAACATCAGATCC
EST: ACTTATGCGAATTCATAGAAGACTGTGAATTCACCTATTTGTCCACTCAG ATACTTCACTTTTTGGGAAATGAAGGCCCCAAAACATCAGATCCCAGTAAA
genomic: ACTTATGCGAATTCATAGAAGACTGTGAATTCACCTATTTGTCCACTCAGgtaatcaact ... cttgtggcagATACTTCACTTTTTGGGAAATGAAGGCCCCAAAACATCAGATCCCAGTAAA
agtaggtcaggtgatttcttcattgtaatcaaattgccttttactcttgtggcagATACTTCACTTTTTGGGAAATGAAGGCCCCAAAACATCAGATCCCAGTAAATACATACGCTATATATACAATAGGGTGATACTTGAAAATGCTACAGTTC
ttgccttttactctt CT-rich tract
attgtaatcaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttatcattatagactagtaaaatatctattcgtggactactttagtaggtcaggtgatttcttcattgtaatcaaattgccttttactcttgtggcagATACTTCACTTTTTGGGAAATGAAGGCCCCAAAACATCAGATCCCAGTAAATACATACGCTATATATACAATAGGGTGATACTTGAAAATGCTACAGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgccttt