1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tctgatccttcgaagttgcttgcattgcttggacgcataactataggactgtcttgaattcttgatacatctcattaccatgtctacgtacaacttgcagGTTAAACTTCGTGGAAGCTCTCCAGATTGCACCCATTGTGGCGAAAACTCCGTTTTCACAGAAGAAGACTTTCAGAAGTTTGACTATGAGAGCTTCACAC
species | Zea mays |
transcript | GRMZM2G157836_T05 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TATGTGGAAGAATGCTACTATTTGATGCACTCTCTGCTCGTATTAGAGTT GTTAAACTTCGTGGAAGCTCTCCAGATTGCACCCATTGTGGCGAAAACTCCEST: gi|78092058|gb|DV520432.1|DV520432
genomic: TATGTGGAAGAATGCTACTATTTGATGCACTCTCTGCTCGTATTAGAGTTgtatgtgact ... caacttgcagGTTAAACTTCGTGGAAGCTCTCCAGATTGCACCCATTGTGGCGAAAACTCC
EST: TATGTGGAAGAATGCTACTATTTGATGCACTCTCTGCTCGTATTAGAGTT GTTAAACTTCGTGGAAGCTCTCCAGATTGCACCCATTGTGGCGAAAACTCCEST: gi|71758127|gb|DR956064.1|DR956064
genomic: TATGTGGAAGAATGCTACTATTTGATGCACTCTCTGCTCGTATTAGAGTTgtatgtgact ... caacttgcagGTTAAACTTCGTGGAAGCTCTCCAGATTGCACCCATTGTGGCGAAAACTCC
EST: TATGTGGAAGAATGCTACTATTTGATGCACTCTCTGCTCGTATTAGAGTT GTTAAACTTCGTGGAAGCTCTCCAGATTGCACCCATTGTGGCGAAAACTCCEST: gi|78088795|gb|DV517188.1|DV517188
genomic: TATGTGGAAGAATGCTACTATTTGATGCACTCTCTGCTCGTATTAGAGTTgtatgtgact ... caacttgcagGTTAAACTTCGTGGAAGCTCTCCAGATTGCACCCATTGTGGCGAAAACTCC
EST: TATGTGGAAGAATGCTACTATTTGATGCACTCTCTGCTCGTATTAGAGTT GTTAAACTTCGTGGAAGCTCTCCAGATTGCACCCATTGTGGCGAAAACTCCEST: gi|50332337|gb|CO527463.1|CO527463
genomic: TATGTGGAAGAATGCTACTATTTGATGCACTCTCTGCTCGTATTAGAGTTgtatgtgact ... caacttgcagGTTAAACTTCGTGGAAGCTCTCCAGATTGCACCCATTGTGGCGAAAACTCC
EST: TATGTGGAAGAATGCTACTATTTGATGCACTCTCTGCTCGTATTAGAGTT GTTAAACTTCGTGGAAGCTCTCCAGATTGCACCCATTGTGGCGAAAACTCCEST: gi|148945732|gb|EC891011.2|EC891011
genomic: TATGTGGAAGAATGCTACTATTTGATGCACTCTCTGCTCGTATTAGAGTTgtatgtgact ... caacttgcagGTTAAACTTCGTGGAAGCTCTCCAGATTGCACCCATTGTGGCGAAAACTCC
EST: TATGTGGAAGAATGCTACTATTTGATGCACTCTCTGCTCGTATTAGAGTT GTTAAACTTCGTGGAAGCTCTCCAGATTGCACCCATTGTGGCGAAAACTCCEST: gi|101400845|gb|EB822120.1|EB822120
genomic: TATGTGGAAGAATGCTACTATTTGATGCACTCTCTGCTCGTATTAGAGTTgtatgtgact ... caacttgcagGTTAAACTTCGTGGAAGCTCTCCAGATTGCACCCATTGTGGCGAAAACTCC
EST: TATGTGAAAGAATGATACTATTTGATGCACTCTCTGCTCGTATTAGAGTT GTTAAACTTCGTGGAAGCTCTCCAGATTGCACCCATTGTGGCGAAAACTCC
genomic: TATGTGGAAGAATGCTACTATTTGATGCACTCTCTGCTCGTATTAGAGTTgtatgtgact ... caacttgcagGTTAAACTTCGTGGAAGCTCTCCAGATTGCACCCATTGTGGCGAAAACTCC
ggactgtcttgaattcttgatacatctcattaccatgtctacgtacaacttgcagGTTAAACTTCGTGGAAGCTCTCCAGATTGCACCCATTGTGGCGAAAACTCCGTTTTCACAGAAGAAGACTTTCAGAAGTTTGACTATGAGAGCTTCACAC
tcttgat putative branch site (score: 4)
ttgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgatccttcgaagttgcttgcattgcttggacgcataactataggactgtcttgaattcttgatacatctcattaccatgtctacgtacaacttgcagGTTAAACTTCGTGGAAGCTCTCCAGATTGCACCCATTGTGGCGAAAACTCCGTTTTCACAGAAGAAGACTTTCAGAAGTTTGACTATGAGAGCTTCACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
-ctgatcc
- - - - - - - - tgcttgc
- - - - - - - - - - - - -tgcttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -attcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgtc