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gtatgtagttggggcttgtgacaatctggctgaagtttttaattcatcataaacagttattcttggtagaaaaaagatttgagttcctccacattgtttcattttcagGTGGCTGTTGAAATGGAATATTCTCGAAGGATCAGCACCGTGGATGGACAGAGTGTTGCTCCAACAGCAAACATTGCTGATACAAGAGTATTAGATTATG
species | Zea mays |
transcript | GRMZM2G136296_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTGCTCGTGAAGCTAAGGAGTTCTTGCGCATGAGGTTGATTGGCAAGCAA GTGGCTGTTGAAATTGAATACTCTCGAAGGATCAGCACCGTGGATGGACAGEST: gi|9566452|gb|BE475961.1|BE475961
genomic: TTGCTCGTGAAGCTAAGGAGTTCTTGCGCATGAGGTTGATTGGCAAGCAAgtatgtagtt ... tcattttcagGTGGCTGTTGAAATGGAATATTCTCGAAGGATCAGCACCGTGGATGGACAG
EST: TTGCTCGTGAAGCTAAGGAGTTCTTGCGCATGAGGTTGATTGGCAAGCAA GTGGCTGTTGAAATGGAAATACTCTCGAAGGATCAGCACCGTGGATGGACAEST: gi|16746003|gb|BM032433.1|BM032433
genomic: TTGCTCGTGAAGCTAAGGAGTTCTTGCGCATGAGGTTGATTGGCAAGCAAgtatgtagtt ... tcattttcagGTGGCTGTTGAAATGG-AATATTCTCGAAGGATCAGCACCGTGGATGGACA
EST: TTGCTCGTGAAGCTAAGGAGTTCTTGCGCATGAGGTTGATTGGCAAGCAA GTGGCTGTTGAAATGGAATACTCTCGAAGGATCAGCACCGTGGATGGACAGEST: gi|21390058|gb|BQ528107.1|BQ528107
genomic: TTGCTCGTGAAGCTAAGGAGTTCTTGCGCATGAGGTTGATTGGCAAGCAAgtatgtagtt ... tcattttcagGTGGCTGTTGAAATGGAATATTCTCGAAGGATCAGCACCGTGGATGGACAG
EST: TTGCTCGTGAAGCTAAGGAGTTCTTGCGCATGAGGTTGATTGGCAAGCAA GTGGCTGTTGAAATGGAATACTCTCGAAGGATCAGCACCGTGGATGGACAGEST: gi|18385299|gb|BM418498.1|BM418498
genomic: TTGCTCGTGAAGCTAAGGAGTTCTTGCGCATGAGGTTGATTGGCAAGCAAgtatgtagtt ... tcattttcagGTGGCTGTTGAAATGGAATATTCTCGAAGGATCAGCACCGTGGATGGACAG
EST: TTGCTCGTGAAGCTAAGGAGTTCTTGCGCATGAGGTTGATTGGCAAGCAA GTGGCTGTTGAAATGGAATACTCTCGAAGGATCAGCACCGTGGATGGACAGEST: gi|13150309|gb|BG320631.1|BG320631
genomic: TTGCTCGTGAAGCTAAGGAGTTCTTGCGCATGAGGTTGATTGGCAAGCAAgtatgtagtt ... tcattttcagGTGGCTGTTGAAATGGAATATTCTCGAAGGATCAGCACCGTGGATGGACAG
EST: TTGCTCGTGAAGCTAAGGAGTTCTTGCGCATGAGGTTGATTGGCAAGCAA GTDGCTGTTGAAATGGAATACTCTCGAAGGATCAGCACCGTGGATGGACAGEST: gi|22489141|gb|BU049064.1|BU049064
genomic: TTGCTCGTGAAGCTAAGGAGTTCTTGCGCATGAGGTTGATTGGCAAGCAAgtatgtagtt ... tcattttcagGTGGCTGTTGAAATGGAATATTCTCGAAGGATCAGCACCGTGGATGGACAG
EST: TTGCTCGTGAAGCTAAGGAGTTCTTGCGCATGAGGTTGATTGGCAAGCAA GTGGCTGTTGAAATGGAATACTCTCGAAGGATCAGCACCGTGGATGGACAGEST: gi|18384789|gb|BM417988.1|BM417988
genomic: TTGCTCGTGAAGCTAAGGAGTTCTTGCGCATGAGGTTGATTGGCAAGCAAgtatgtagtt ... tcattttcagGTGGCTGTTGAAATGGAATATTCTCGAAGGATCAGCACCGTGGATGGACAG
EST: TTGCTCGTGAAGCTAAGGAGTTCTTGCGCATGAGGTTGATTGGCAAGCAA GTGGCTGTTGAAATGGAATACTCTCGAAGGATCAGCACCGTGGATGGACAGEST: gi|18384787|gb|BM417986.1|BM417986
genomic: TTGCTCGTGAAGCTAAGGAGTTCTTGCGCATGAGGTTGATTGGCAAGCAAgtatgtagtt ... tcattttcagGTGGCTGTTGAAATGGAATATTCTCGAAGGATCAGCACCGTGGATGGACAG
EST: TTGCTCGTGAAGCTAAGGAGTTCTTGCGCATGAGGTTGATTGGCAAGCAA GTGGCTGTTGAAATGGAATACTCTCGAAGGATCAGCACCGTGGATGGACAGEST: gi|211479964|gb|FL426378.1|FL426378
genomic: TTGCTCGTGAAGCTAAGGAGTTCTTGCGCATGAGGTTGATTGGCAAGCAAgtatgtagtt ... tcattttcagGTGGCTGTTGAAATGGAATATTCTCGAAGGATCAGCACCGTGGATGGACAG
EST: TTGCTCGTGAAGCTAAGGAGTTCTTGCGCATGAGGTTGATTGGCAAGCAA GTGGCTGTTGAAATGGAATACTCCCGAAGGATCAGCACCGTGGATGGACAGEST: gi|88758397|gb|DY542766.1|DY542766
genomic: TTGCTCGTGAAGCTAAGGAGTTCTTGCGCATGAGGTTGATTGGCAAGCAAgtatgtagtt ... tcattttcagGTGGCTGTTGAAATGGAATATTCTCGAAGGATCAGCACCGTGGATGGACAG
EST: TTGCTCGTGAAGCTAAGGAGTTCTTGCGCATGAGGTTGATTGGCAAGCAA GTGGCTGTTGAAATGGAATACTCTCGAAGGATCAGCACCGTGGATGGACAGEST: gi|211277470|gb|FL423592.1|FL423592
genomic: TTGCTCGTGAAGCTAAGGAGTTCTTGCGCATGAGGTTGATTGGCAAGCAAgtatgtagtt ... tcattttcagGTGGCTGTTGAAATGGAATATTCTCGAAGGATCAGCACCGTGGATGGACAG
EST: TTGCTCGTGAAGCTAAGGAGTTCTTGCGCATGAGGTTGATTGGCAAGCAA GTGGCTGTTGAAATGGAATACTCTCGAAGGATCAGCACCGTGGATGGACAGEST: gi|211005422|gb|FL371735.1|FL371735
genomic: TTGCTCGTGAAGCTAAGGAGTTCTTGCGCATGAGGTTGATTGGCAAGCAAgtatgtagtt ... tcattttcagGTGGCTGTTGAAATGGAATATTCTCGAAGGATCAGCACCGTGGATGGACAG
EST: TTGCTCGTGAAGCTAAGGAGTTCTTGCGCATGAGGTTGATTGGCAAGCAA GTGGCTGTTGAAATGGAATACTCCCGAAGGATCAGCACCGTGGATGGACAGEST: gi|211311595|gb|FL416730.1|FL416730
genomic: TTGCTCGTGAAGCTAAGGAGTTCTTGCGCATGAGGTTGATTGGCAAGCAAgtatgtagtt ... tcattttcagGTGGCTGTTGAAATGGAATATTCTCGAAGGATCAGCACCGTGGATGGACAG
EST: TTGCTCGTGAAGCTAAGGAGTTCTTGCGCATGAGGTTGATTGGCAAGCAA GTGGCTGTTGAAATGGAATACTCCCGAAGGATCAGCACCGTGGATGGACAGEST: gi|60394760|gb|DN227630.1|DN227630
genomic: TTGCTCGTGAAGCTAAGGAGTTCTTGCGCATGAGGTTGATTGGCAAGCAAgtatgtagtt ... tcattttcagGTGGCTGTTGAAATGGAATATTCTCGAAGGATCAGCACCGTGGATGGACAG
EST: TTGCTCGTGAAGCTAAGGAGTTCTTGCGCATGAGGTTGATTGGCAAGCAA GTGGCTGTTGAAATGGAATATTCTCGAAGGATCAGCACCGTGGATGGACAG
genomic: TTGCTCGTGAAGCTAAGGAGTTCTTGCGCATGAGGTTGATTGGCAAGCAAgtatgtagtt ... tcattttcagGTGGCTGTTGAAATGGAATATTCTCGAAGGATCAGCACCGTGGATGGACAG
cagttattcttggtagaaaaaagatttgagttcctccacattgtttcattttcagGTGGCTGTTGAAATGGAATATTCTCGAAGGATCAGCACCGTGGATGGACAGAGTGTTGCTCCAACAGCAAACATTGCTGATACAAGAGTATTAGATTATG
tttcattttc CT-rich tract
tagaaaaaagattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtagttggggcttgtgacaatctggctgaagtttttaattcatcataaacagttattcttggtagaaaaaagatttgagttcctccacattgtttcattttcagGTGGCTGTTGAAATGGAATATTCTCGAAGGATCAGCACCGTGGATGGACAGAGTGTTGCTCCAACAGCAAACATTGCTGATACAAGAGTATTAGATTATG
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