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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgaatatttgaatgaaaactgaatatttaagtgtgtaaaatgatacacatggcactttgtttaagtgttgataaaccttcttaactaacattgtttgcagGACAAGTATATGCAAAATAGACTAGTGAGACTAGTATGTGTCTTTCTACAGAGCCTCATTCGGAACAAGATAATAGATG

Basic information

species Zea mays
transcript GRMZM2G133757_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G133757_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os11g13694.1 (Oryza sativa), 3'ss of exon 10
tgaatatttgaatgaaaactgaatatttaagtgtgtaaaatgatacacatggcactttgttta---agtgttgataa---accttcttaactaacattgtttgcagGACAAGTATATGCAAAATAGACTAGTGAGACTAGTATGTGTCTTTCTACAGAGCCTCATTCGGAACAAGATAATAGATG
|  |||     || |   ||   |  || |  |||| |  ||| | | || |    |||| ||   | |  ||| |       || ||   |||| || ||| ||||| || || |||||||| || ||||| || ||||||||||| || |||||||| |||||||| |||||||||||| |||
ttgatacc---atcagttctacct-cttgatcgtgtgat-tgaca-atattgtttattgtgtagaaaattctgagattttgtttttttgtttaacgttctttacagGATAAATACATGCAAAACAGGCTAGTAAGGCTAGTATGTGTTTTCCTACAGAGTCTCATTCGAAACAAGATAATAAATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101395522|gb|EB819689.1|EB819689
EST:     TTGTTCACGACTATATCTCAAACTGCATTCGATCATGTGAAGACATTAAG                         GACAAGTATATGCAAAATAGACTAGTGAGACTAGTATGTGTCTTTTTACAG
genomic: TTGTTCACGACTATATCTCAAACTGCATTCGATCATGTGAAGACATTAAGgtttggttct ... ttgtttgcagGACAAGTATATGCAAAATAGACTAGTGAGACTAGTATGTGTCTTTCTACAG
EST: gi|74240368|gb|DT648282.1|DT648282
EST:     TTGTTCACGACTATATCTCAAACTGCATTCGATCATGTGAAGACATTAAG                         GACAAGTATATGCAAAATAGACTAGTGAGATTAGTATGTGTCTTTTTACAG
genomic: TTGTTCACGACTATATCTCAAACTGCATTCGATCATGTGAAGACATTAAGgtttggttct ... ttgtttgcagGACAAGTATATGCAAAATAGACTAGTGAGACTAGTATGTGTCTTTCTACAG
EST: gi|33095887|gb|CF055881.1|CF055881
EST:     TTGTTCACGACTATATCTCAAACTGCATTCGATCATGTGAAGACATTAAG                         GACAAGTATATGCAAAATAGACTAGTGAGACTAGTATGTGTCTTTCTACAG
genomic: TTGTTCACGACTATATCTCAAACTGCATTCGATCATGTGAAGACATTAAGgtttggttct ... ttgtttgcagGACAAGTATATGCAAAATAGACTAGTGAGACTAGTATGTGTCTTTCTACAG
EST: gi|74237045|gb|DT644959.1|DT644959
EST:     TTGTTCACGACTATATCTCAAACTGCATTCGATCATGTGAAGACATTAAG                         GACAAGTATATGCAAAATAGACTAGTGAGACTAGTATGTGTCTTTCTACAG
genomic: TTGTTCACGACTATATCTCAAACTGCATTCGATCATGTGAAGACATTAAGgtttggttct ... ttgtttgcagGACAAGTATATGCAAAATAGACTAGTGAGACTAGTATGTGTCTTTCTACAG
EST: gi|76289048|gb|DV028616.1|DV028616
EST:     TTGTTCACGACTATATCTCAAACTGCATTCGATCATGTGAAGACATTAAG                         GACAAGTATATGCAAAATAGACTAGTGAGACTAGTATGTGTCTTTCTACAG
genomic: TTGTTCACGACTATATCTCAAACTGCATTCGATCATGTGAAGACATTAAGgtttggttct ... ttgtttgcagGACAAGTATATGCAAAATAGACTAGTGAGACTAGTATGTGTCTTTCTACAG
EST: gi|60339490|gb|DN206463.1|DN206463
EST:     TTGTTCACGACTATATCTCAAACTGCATTCGATCATGTGAAGACATTAAG                         GACAAGTATATGCAAAATAGACTAGTGAGACTAGTATGTGTCTTTCTACAG
genomic: TTGTTCACGACTATATCTCAAACTGCATTCGATCATGTGAAGACATTAAGgtttggttct ... ttgtttgcagGACAAGTATATGCAAAATAGACTAGTGAGACTAGTATGTGTCTTTCTACAG
EST: gi|71443366|gb|DR824416.1|DR824416
EST:     TTGTTCACGACTATATCTCAAACTGCATTCGATCATGTGAAGACATTAAG                         GACAAGTATATGCAAAATAGACTAGTGAGACTAGTATGTGTCTTTCTACAG
genomic: TTGTTCACGACTATATCTCAAACTGCATTCGATCATGTGAAGACATTAAGgtttggttct ... ttgtttgcagGACAAGTATATGCAAAATAGACTAGTGAGACTAGTATGTGTCTTTCTACAG
EST: gi|60401226|gb|DN234033.1|DN234033
EST:     TTGTTCACGACTATATCTCAAACTGCATTCGATCATGTGAAGACATTAAG                         GACAAGTATATGCAAAATAGACTAGTGAGACTAGTATGTGTCTTTCTACAG
genomic: TTGTTCACGACTATATCTCAAACTGCATTCGATCATGTGAAGACATTAAGgtttggttct ... ttgtttgcagGACAAGTATATGCAAAATAGACTAGTGAGACTAGTATGTGTCTTTCTACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacatggcactttgtttaagtgttgataaaccttcttaactaacattgtttgcagGACAAGTATATGCAAAATAGACTAGTGAGACTAGTATGTGTCTTTCTACAGAGCCTCATTCGGAACAAGATAATAGATG
                                     aactaac  putative branch site (score: 1)
          tttgtttaa  TA-rich tract