Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtattcagaactgctggttctctaaaacacagttttttgttcttttttgaaggatagtagcaatttttaatgaaaaacatttcttgtttagGCCTATGCTTGGGGCATCAACATACTCAACTGGCAGAGACACTTGAACTTTCTTACATGGCCTGAAATATTGCGCCAATTTGGTTTATGTGCTGGTTTTG

Basic information

species Zea mays
transcript GRMZM2G125294_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G125294_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os05g48820.1 (Oryza sativa), 3'ss of exon 10
gtatgtattcagaactgctggttctctaaaacacagttttttgttcttttttgaagg----atagtagcaatttttaatgaaaaac-----atttcttgtt--tagGCCTATGCTTGGGGCATCAACATACTCAACTGGCAGAGACACTTGAACTTTCTTACATGGCCTGAAATATTGCGCCAATTTGGTTTATGTGCTGGTTTTG
|| ||| | |||| ||     | || ||| | | || || |  |    ||  | |       |  ||   || |||  | ||| |      || |||| ||  ||||| || | ||||||| ||||||||||   ||||||| |||||||||| || |||||||||||||||||||||||||| |||||||||| ||||||| |||
gtgtgtgtgcagatctt----tgctataacatagagcttctattcaaattgagtaaattctgtgctatttatattttctaaaacattcctgatctcttattgctagGCATACGATTGGGGCTTCAACATACTTGCCTGGCAGCGACACTTGAATTTGCTTACATGGCCTGAAATATTGCGCCAGTTTGGTTTATCTGCTGGTCTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttcttttttgaaggatagtagcaatttttaatgaaaaacatttcttgtttagGCCTATGCTTGGGGCATCAACATACTCAACTGGCAGAGACACTTGAACTTTCTTACATGGCCTGAAATATTGCGCCAATTTGGTTTATGTGCTGGTTTTG
                            ttttaat  putative branch site (score: 3)
                                           tttcttgttt  putative PPT
                         aatttttaatgaaaaa  TA-rich tract