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gtaaaaaaaaaatcgtcagcagaagcctgctgctactgttatctatttggtgccaaatctgacggtttccctgcgtccttcagATACATCATGGTCATCAAGGTCTCCGATCCTACTGGCGAGGCATGGTTCTCTGTGTTCAACGAGCATGCAGAGAAGATCATTGGCTGCAGCGCCGACGAG
species | Zea mays |
transcript | GRMZM2G098714_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GGATACTGGTGCGAGGGATGCCAAAAGAATGACTCGGAATGCTCACTGAG ATACATCATGGTCGTCAAGGTCTCCGATCCTACTGGCGAGGCATGGGTCTCEST: gi|60348547|gb|DN215520.1|DN215520
genomic: GGATACTGGTGTGAGGGATGCCAAAAGAATGACTCGGAATGCTCACTGAGgtaaaaaaaa ... cgtccttcagATACATCATGGTCATCAAGGTCTCCGATCCTACTGGCGAGGCATGGTTCTC
EST: GGATACTGGTGTGAGGGATGCCAAAAGAATGACTCGGAATGCTCACTGAG ATACATCATGGTCATCAAGGTCTCCGATCCTACTGGCGAGGCATGGTTCTCEST: gi|14244513|gb|BG842483.2|BG842483
genomic: GGATACTGGTGTGAGGGATGCCAAAAGAATGACTCGGAATGCTCACTGAGgtaaaaaaaa ... cgtccttcagATACATCATGGTCATCAAGGTCTCCGATCCTACTGGCGAGGCATGGTTCTC
EST: AATGACTCGGAATGCTCACTGAG ATACATCATGGTCATCAAGGTCTCCGATCCTACTGGCGAGGCATGGTTCTCEST: gi|14245218|gb|BG873800.1|BG873800
genomic: AATGACTCGGAATGCTCACTGAGgtaaaaaaaa ... cgtccttcagATACATCATGGTCATCAAGGTCTCCGATCCTACTGGCGAGGCATGGTTCTC
EST: GGATACTGGTGTGAGGGATGCCAAAAGAATGACTCGGAATGCTCACTGAG ATACATCATGGTCATCAAGGTCTCCGATCCTACTGGCGAGGCATGGTTCTCEST: gi|32826816|gb|CD966494.1|CD966494
genomic: GGATACTGGTGTGAGGGATGCCAAAAGAATGACTCGGAATGCTCACTGAGgtaaaaaaaa ... cgtccttcagATACATCATGGTCATCAAGGTCTCCGATCCTACTGGCGAGGCATGGTTCTC
EST: GGATACTGGTGCGAGGGATGCCAAAAGAATGACTCGGAATGCTCACTGAG ATACATCATGGTCATCAAGGTCTCCGATCCTACTGGCGAGGCATGGTTCTCEST: gi|29945005|gb|CB815420.1|CB815420
genomic: GGATACTGGTGTGAGGGATGCCAAAAGAATGACTCGGAATGCTCACTGAGgtaaaaaaaa ... cgtccttcagATACATCATGGTCATCAAGGTCTCCGATCCTACTGGCGAGGCATGGTTCTC
EST: GGATACTGGTGTGAGGGATGCCAAAAGAATGACTCGGAATGCTCACTGAG ATACATCATGGTCATCAAGGTCTCCGATCCTACTGGCGAGGCATGGTTCTCEST: gi|211343908|gb|FL063197.1|FL063197
genomic: GGATACTGGTGTGAGGGATGCCAAAAGAATGACTCGGAATGCTCACTGAGgtaaaaaaaa ... cgtccttcagATACATCATGGTCATCAAGGTCTCCGATCCTACTGGCGAGGCATGGTTCTC
EST: GGATACTGGTGTGAGGGATGCCAAAAGAATGACTCGGAATGCTCACTGAG ATACATCATGGTCATCAAGGTTTCCGATCCTACTGGCGAMG-ATGGGTCTCEST: gi|71759809|gb|DR957746.1|DR957746
genomic: GGATACTGGTGTGAGGGATGCCAAAAGAATGACTCGGAATGCTCACTGAGgtaaaaaaaa ... cgtccttcagATACATCATGGTCATCAAGGTCTCCGATCCTACTGGCGAGGCATGGTTCTC
EST: GGATACTGGTGTGAGGGATGCCAAAAGAATGACTCGGAATGCTCACTGAG ATACATCATGGTCATCAAGGTCTCCGATCCTACTGGCGAGGCATGGTTCTCEST: gi|29945324|gb|CB815582.1|CB815582
genomic: GGATACTGGTGTGAGGGATGCCAAAAGAATGACTCGGAATGCTCACTGAGgtaaaaaaaa ... cgtccttcagATACATCATGGTCATCAAGGTCTCCGATCCTACTGGCGAGGCATGGTTCTC
EST: GGATACTGGTGTGAGGGATGCCAAAAGAATGACTCGGAATGCTCACTGAG ATACATCATGGTCATCAAGGTCTCCGATCCTACTGGCGAGGCATGGTTCTCEST: gi|211341514|gb|FL063180.1|FL063180
genomic: GGATACTGGTGTGAGGGATGCCAAAAGAATGACTCGGAATGCTCACTGAGgtaaaaaaaa ... cgtccttcagATACATCATGGTCATCAAGGTCTCCGATCCTACTGGCGAGGCATGGTTCTC
EST: GGATACTGGTGCGAGGGATGCCAAAAGAATGACTCGGAATGCTCACTGAG ATACATCATGGTCGTCAAGGTCTCCGATCCTACTGGCGAGGCATGGGTCTC
genomic: GGATACTGGTGTGAGGGATGCCAAAAGAATGACTCGGAATGCTCACTGAGgtaaaaaaaa ... cgtccttcagATACATCATGGTCATCAAGGTCTCCGATCCTACTGGCGAGGCATGGTTCTC
gctgctactgttatctatttggtgccaaatctgacggtttccctgcgtccttcagATACATCATGGTCATCAAGGTCTCCGATCCTACTGGCGAGGCATGGTTCTCTGTGTTCAACGAGCATGCAGAGAAGATCATTGGCTGCAGCGCCGACGAG
atctgac putative branch site (score: 12)
tttccctgcgtccttc putative PPT
ttatctattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaaaaaaaatcgtcagcagaagcctgctgctactgttatctatttggtgccaaatctgacggtttccctgcgtccttcagATACATCATGGTCATCAAGGTCTCCGATCCTACTGGCGAGGCATGGTTCTCTGTGTTCAACGAGCATGCAGAGAAGATCATTGGCTGCAGCGCCGACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG