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gtaccatattgcttacttgctactctggtgactgatgtatcatctttcttgtacctagaactagaaaagccaaaatggcctatagtttggggtggtcagagtatttactatgtatatcactaattgtaatatttttcagGGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGACATTGAGAAAGGGATAAACAACCTTGCAAAGAAAGCAACTGAGGGGGCGC
species | Zea mays |
transcript | GRMZM2G079538_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCATATACAGAGACTACGTAGACATCAGTGTTGCTGTTGGCACTTCCAAG GGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGACEST: gi|6102024|gb|AW126494.1|AW126494
genomic: TCATATACAGAGACTACGTAGACATCAGTGTTGCTGTTGGCACTTCCAAGgtaccatatt ... tatttttcagGGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGAC
EST: TCATATCCAGAGACTACGTAGACATCAGTGTTGCTGTTGGCACTTCCAAG GGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGACEST: gi|110528815|gb|EE032999.1|EE032999
genomic: TCATATACAGAGACTACGTAGACATCAGTGTTGCTGTTGGCACTTCCAAGgtaccatatt ... tatttttcagGGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGAC
EST: ACGTAGACATCAGTGTTGCTGTTGGCACTTCCAAG GGCCTTGTGGTTCCTGTTATCCGAGATGGTGATACCATGAACTTTGCTGACEST: gi|31363969|gb|CD448324.1|CD448324
genomic: ACGTAGACATCAGTGTTGCTGTTGGCACTTCCAAGgtaccatatt ... tatttttcagGGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGAC
EST: TCATATACAGAGACTACGTAGACATCAGTGTTGCTGTTGGCACTTCCAAG GGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGACEST: gi|6021309|gb|AW066237.1|AW066237
genomic: TCATATACAGAGACTACGTAGACATCAGTGTTGCTGTTGGCACTTCCAAGgtaccatatt ... tatttttcagGGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGAC
EST: TCATATACAGAGACTACGTAGACATCAGTGTTGCTGTTGGCACTTCCAAG GGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGACEST: gi|31358903|gb|CD443260.1|CD443260
genomic: TCATATACAGAGACTACGTAGACATCAGTGTTGCTGTTGGCACTTCCAAGgtaccatatt ... tatttttcagGGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGAC
EST: CATATACAGAGACTACGTAGACATCAGTGGTGCGTGGTGGCACTTCCAAG GGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGACEST: gi|211169880|gb|FL077609.1|FL077609
genomic: CATATACAGAGACTACGTAGACATCAGTGTTGC-TGTTGGCACTTCCAAGgtaccatatt ... tatttttcagGGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGAC
EST: TCATATACAGAGACTACGTAGACATCAGTGTTGCTGTTGGCACTTCCAAG GGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGACEST: gi|32830086|gb|CD969764.1|CD969764
genomic: TCATATACAGAGACTACGTAGACATCAGTGTTGCTGTTGGCACTTCCAAGgtaccatatt ... tatttttcagGGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGAC
EST: TCATATACAGAGACTACGTAGACATCAGTGTTGCTGTTGGCACTTCCAAG GGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGACEST: gi|13558100|gb|BG549456.1|BG549456
genomic: TCATATACAGAGACTACGTAGACATCAGTGTTGCTGTTGGCACTTCCAAGgtaccatatt ... tatttttcagGGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGAC
EST: TCATATACAGAGACTACGTAGACATCAGTGTTGCTGTTGGCACTTCCAAG GGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGACEST: gi|32942914|gb|CF047733.1|CF047733
genomic: TCATATACAGAGACTACGTAGACATCAGTGTTGCTGTTGGCACTTCCAAGgtaccatatt ... tatttttcagGGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGAC
EST: TCATATACGGAGACTACGTAGACATCAGTGTTGCTGTTGGCACTTCCAAG GGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGACEST: gi|60358853|gb|DN225826.1|DN225826
genomic: TCATATACAGAGACTACGTAGACATCAGTGTTGCTGTTGGCACTTCCAAGgtaccatatt ... tatttttcagGGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGAC
EST: TCATATACAGAGACTACGTAGACATCAGTGTTGCTGTTGGCACTTCCAAG GGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGACEST: gi|6227238|gb|AW155837.1|AW155837
genomic: TCATATACAGAGACTACGTAGACATCAGTGTTGCTGTTGGCACTTCCAAGgtaccatatt ... tatttttcagGGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGAC
EST: TCATATACAGAGACTACGTAGACATCAGTGTTGCTGTTGGCACTTCCAAG GGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGACEST: gi|32829046|gb|CD968724.1|CD968724
genomic: TCATATACAGAGACTACGTAGACATCAGTGTTGCTGTTGGCACTTCCAAGgtaccatatt ... tatttttcagGGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGAC
EST: TCATATACAGAGACTACGTAGACATCAGTGTTGCTGTTGGCACTTCCAAG GGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGACEST: gi|32828877|gb|CD968555.1|CD968555
genomic: TCATATACAGAGACTACGTAGACATCAGTGTTGCTGTTGGCACTTCCAAGgtaccatatt ... tatttttcagGGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGAC
EST: TCATATACAGAGACTACGTAGACATCAGTGTTGCTGTTGGCACTTCCAAG GGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGACEST: gi|211169873|gb|FL077602.1|FL077602
genomic: TCATATACAGAGACTACGTAGACATCAGTGTTGCTGTTGGCACTTCCAAGgtaccatatt ... tatttttcagGGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGAC
EST: TCATATACAGAGACTACGTAGACATCAGTGTTGCTGTTGGCACTTCCAAG GGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGACEST: gi|148978724|gb|EE026282.2|EE026282
genomic: TCATATACAGAGACTACGTAGACATCAGTGTTGCTGTTGGCACTTCCAAGgtaccatatt ... tatttttcagGGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGAC
EST: TTGCTGTTGGCACTTCCAAG GGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGACEST: gi|8368148|gb|BE051093.1|BE051093
genomic: TTGCTGTTGGCACTTCCAAGgtaccatatt ... tatttttcagGGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGAC
EST: CAGAGACTACGTAGACATCAGTGTTGCTGTTGGCACTTCCAAG GGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGACEST: gi|14548407|gb|BI096736.1|BI096736
genomic: CAGAGACTACGTAGACATCAGTGTTGCTGTTGGCACTTCCAAGgtaccatatt ... tatttttcagGGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGAC
EST: TCATATACAGAGACTACGTAGACATCAGTGTTGCTGTTGGCACTTCCAAG GGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGACEST: gi|13558537|gb|BG549893.1|BG549893
genomic: TCATATACAGAGACTACGTAGACATCAGTGTTGCTGTTGGCACTTCCAAGgtaccatatt ... tatttttcagGGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGAC
EST: TCATATACAGAGACTACGTAGACATCAGTGTTGCTGTTGGCACTTCCAAG GGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGACEST: gi|32867030|gb|CF006712.1|CF006712
genomic: TCATATACAGAGACTACGTAGACATCAGTGTTGCTGTTGGCACTTCCAAGgtaccatatt ... tatttttcagGGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGAC
EST: TCATATACAGAGACTACGTAGACATCAGTGTTGCTGTTGGCACTTCCAAG GGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGACEST: gi|67019048|gb|CO447797.1|CO447797
genomic: TCATATACAGAGACTACGTAGACATCAGTGTTGCTGTTGGCACTTCCAAGgtaccatatt ... tatttttcagGGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGAC
EST: TCATATACAGAGACTACGTAGACATCAGTGTTGCTGTTGGCACTTCCAAG GGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGAC
genomic: TCATATACAGAGACTACGTAGACATCAGTGTTGCTGTTGGCACTTCCAAGgtaccatatt ... tatttttcagGGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGAC
gtttggggtggtcagagtatttactatgtatatcactaattgtaatatttttcagGGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGACATTGAGAAAGGGATAAACAACCTTGCAAAGAAAGCAACTGAGGGGGCGC
cactaat putative branch site (score: 207)
tatttttc putative PPT
tatttactatgtatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccatattgcttacttgctactctggtgactgatgtatcatctttcttgtacctagaactagaaaagccaaaatggcctatagtttggggtggtcagagtatttactatgtatatcactaattgtaatatttttcagGGCCTTGTGGTTCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGACATTGAGAAAGGGATAAACAACCTTGCAAAGAAAGCAACTGAGGGGGCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
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