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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaatttactaaacaaatcacgtctttggtcctatacttattgtctttctaatatactttctgtttgcaacttgcagTTCATCAGAGATGGTCCTGTGATAGCTTTCTTTTACTGGACATCTAATTTTCATCGTTTCGAATTCTTTAGACGGTTGAGGCTTCCTGAATAGTTCCCAT

Basic information

species Zea mays
transcript GRMZM2G079428_T05
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G079428_T05 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os10g34400.2 (Oryza sativa), 3'ss of exon 10
---gtgaatttactaaacaaatcacg--tctttggtcctatacttattgtctttctaatatactttctgtttgc-aacttgcagTTCATCAGAGATGGTCCTGTGATAGCTTTCTTTTACTGGACATCTAATTTTCATCGTTTCGAATTCTTTAGACGGTTGAGGCTTCCTGAATAGTTCCCAT
   |  || |    | | ||  |||   || |||    |  ||    |   ||| |   | |  || ||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||| ||||||||||| ||||||| ||||||||| ||||| |   
gttgaaaactattcatataatgcacatttccttgtatattcacgagatacttttttttaacaggttttgtttgtgaatttgcagTTCATCAGAGATGGTCCTGTGATAGCTTTCTTTTACTGGACATCAAACTTTCATCTTTTTGAATTCTTTAGGCGGTTGAAGCTTCCTGATTAGTTTCAGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttggtcctatacttattgtctttctaatatactttctgtttgcaacttgcagTTCATCAGAGATGGTCCTGTGATAGCTTTCTTTTACTGGACATCTAATTTTCATCGTTTCGAATTCTTTAGACGGTTGAGGCTTCCTGAATAGTTCCCAT
                        ttctaat  putative branch site (score: 2)
                       tttctaatatacttt  TA-rich tract