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gtttgaacttaagcaattactgatagaacaatctgataaaaaaggatctaatttggctttttaatgttgaatttaacagAAATTGAGTATATTGCCAAGATCTGGAGGTGCATTAGGCTTCACGTACACCCCTCCCGTCACAGAGGATAGATATTTACTCTTTGTTGATGAACTACGTG
species | Zea mays |
transcript | GRMZM2G072865_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCGTGGGAACTGCTGTAGCAAACCTCCTTCCTGGACAGCCACGTGTGGAG AAATTGAGTATATTGCCAAGATCCGGAGGTGCATTAGGCTTCACGTAEST: gi|32926300|gb|CF031112.1|CF031112
genomic: TCGTGGGAACTGCTGTAGCAAACCTCCTTCCTGGACAGCCACGTGTGGAGgtttgaactt ... aatttaacagAAATTGAGTATATTGCCAAGATCTGGAGGTGCATTAGGCTTCACGTA
EST: TCGTGGGAACTGCTGTAGCAAACCTCCTTCCTGGACAGCCACGTGTGGAG AAGATTGAGATATATTGCCAAGATCCGGAGGTGCATTAGGCTTCACGTAEST: gi|32926533|gb|CF031345.1|CF031345
genomic: TCGTGGGAACTGCTGTAGCAAACCTCCTTCCTGGACAGCCACGTGTGGAGgtttgaactt ... aatttaacagAA-ATTGAG-TATATTGCCAAGATCTGGAGGTGCATTAGGCTTCACGTA
EST: TCGTGGGAACTGCTGTAGCAAACCTCCTTCCTGGACAGCCACGTGTGGAG AGAATTGAGTATATTGCCAAGATCCGGAGGTGCATTAGGCTTCACGTEST: gi|32926980|gb|CF031792.1|CF031792
genomic: TCGTGGGAACTGCTGTAGCAAACCTCCTTCCTGGACAGCCACGTGTGGAGgtttgaactt ... aatttaacagA-AATTGAGTATATTGCCAAGATCTGGAGGTGCATTAGGCTTCACGT
EST: TCGTGGGAACTGCTGTAGCAAACCTCCTTCCTGGACAGCCACGTGTGGAG AAATTGAGTATATTGCCAAGATCCGGAGGTGCATTAGGCTTCACGTAEST: gi|32925415|gb|CF030227.1|CF030227
genomic: TCGTGGGAACTGCTGTAGCAAACCTCCTTCCTGGACAGCCACGTGTGGAGgtttgaactt ... aatttaacagAAATTGAGTATATTGCCAAGATCTGGAGGTGCATTAGGCTTCACGTA
EST: TCGTGGGAACTGCTGTAGCAAACCTCCTTCCTGGACAGCCACGTGTGGAG AAATTGAGTATATTGCCAAGATCCGGAGGTGCATTAGGCTTCACGTEST: gi|32844467|gb|CD984148.1|CD984148
genomic: TCGTGGGAACTGCTGTAGCAAACCTCCTTCCTGGACAGCCACGTGTGGAGgtttgaactt ... aatttaacagAAATTGAGTATATTGCCAAGATCTGGAGGTGCATTAGGCTTCACGT
EST: TCGTGGGAACTGCTGTAGCAAACCTCCTTCCTGGACAGCCACGTGTGGAG AAATTGAGTATATTGCCAAGATCCGGAGGTGCATTAGGCTTCACGTACEST: gi|60338252|gb|DN205225.1|DN205225
genomic: TCGTGGGAACTGCTGTAGCAAACCTCCTTCCTGGACAGCCACGTGTGGAGgtttgaactt ... aatttaacagAAATTGAGTATATTGCCAAGATCTGGAGGTGCATTAGGCTTCACGTAC
EST: TCGTGGGAACTGCTGTAGCAAACCTCCTTCCTGGACAGCCACGTGTGGAG AAATTGAGTATATTGCCAAGATCTGGAGGTGCATTAGGCTTCACGTACACCEST: gi|32927000|gb|CF031812.1|CF031812
genomic: TCGTGGGAACTGCTGTAGCAAACCTCCTTCCTGGACAGCCACGTGTGGAGgtttgaactt ... aatttaacagAAATTGAGTATATTGCCAAGATCTGGAGGTGCATTAGGCTTCACGTACACC
EST: TCGTGGGAACTGCTGTAGCAAACCTCCTTCCTGGACAGCCACGTGTGGAG AAATTGAGTATATTGCCAAGATCCGGAGGTGCATTAGGCTTCACGTA
genomic: TCGTGGGAACTGCTGTAGCAAACCTCCTTCCTGGACAGCCACGTGTGGAGgtttgaactt ... aatttaacagAAATTGAGTATATTGCCAAGATCTGGAGGTGCATTAGGCTTCACGTA
agaacaatctgataaaaaaggatctaatttggctttttaatgttgaatttaacagAAATTGAGTATATTGCCAAGATCTGGAGGTGCATTAGGCTTCACGTACACCCCTCCCGTCACAGAGGATAGATATTTACTCTTTGTTGATGAACTACGTG
ttttaat putative branch site (score: 124)
tttttaatgttgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgaacttaagcaattactgatagaacaatctgataaaaaaggatctaatttggctttttaatgttgaatttaacagAAATTGAGTATATTGCCAAGATCTGGAGGTGCATTAGGCTTCACGTACACCCCTCCCGTCACAGAGGATAGATATTTACTCTTTGTTGATGAACTACGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT