Sequence
atgc intronic sequence ATGC exonic sequencegtatgtattacatactgacccctgtgtttgttctacattgtggatgctcgaaattaactgggtgttctgcatgtctgtagGCGTTGGATAAGATTAGGTTCCTTTCCCTTACTGATAAGGAAGTTTTGGGTGAAAGGGACACTGCAAAGCTTGAGATTCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G063988_T02 (Zea mays), 3'ss of exon 10
lower sequence: GLYMA14G40320.4 (Glycine max), 3'ss of exon 3
------------------------gtatgtattacatactgacccctgtgtttg--ttctacattgtggatgctcgaa------attaac--tgggtgttctgcatgtctgtagGCGTTGGATAAGATTAGGTTCCTTTCCCTTACTGATAAGGAAGTTTTGGGTGAAAGGGACACTGCAAAGCTTGAGATTCAG
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gtaagcgctttttttttaaaaaaaatat-ttttgtttaaaaatccttgcatttaaattttttatt-tgaattgttgaacgatttgttaatggcgaataatgtgcacat-tctagGCTTTGGACAAGATTAGGTTCCTCTCCCTCACGGATAAGGAGGTGTTGGGAGAAGGTGATAACACCAAGCTTGATATTCAG
upper sequence: GRMZM2G063988_T02 (Zea mays), 3'ss of exon 10
lower sequence: GLYMA17G37820.1 (Glycine max), 3'ss of exon 3
----------------------------------------------------------------gtatgtattacatactgacccctgtg---tttgttctacattgtg--gatgc-tcgaaattaactgggtgttctgcatgt-ctgtagGCGTTGGATAAGATTAGGTTCCTTTCCCTTACTGATAAGGAAGTTTTGGGTGAAAGGGACACTGCAAAGCTTGAGATTCAG
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tgtaagcgttttttttttattgttatttatttgagttaaaacctacatctattcatatgcttgtttacattttgaaaatccatgcatttaaattttcatccaaactccaacgatgtgttattgttaatgacaaatgatgcttgcattctaGGCTTTGGACAAGATTAGGTTCCTTTCCCTCACGGATAAGGACGTTTTGGGAGAAGGTGATAACACCAAGCTTGATATTCA-
upper sequence: GRMZM2G063988_T02 (Zea mays), 3'ss of exon 10
lower sequence: AT4G24190.2 (Arabidopsis thaliana), 3'ss of exon 3
------------gtatgtattacat-actgacccctgtgtttgttctacattgtggatgctcgaaattaactgggtgttctgcatgtctgtagGCGTTGGATAAGATTAGGTTCCTTTCCCTTACTGATAAGGAAGTTTTGGGTGAAAGGGACACTGCAAAGCTTGAGATTCAG
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gtaagcagcttcgtgtacattgttttagtgagtttttgggatacctcgttaaataggggaactaa--taagtgtctgtgttggtgattttcagGCCTTGGACAAAATTAGGTTCCTTGCACTCACTGACAAAGACGTTTTGGGTGAAGGTGACACTGCTAAGCTTGAGATCCAG
upper sequence: GRMZM2G063988_T02 (Zea mays), 3'ss of exon 10
lower sequence: Vv18s0001g14500.t01 (Vitis vinifera), 3'ss of exon 3
gtatgtattacat-actgacccctgtgtttgttctacattgtggatgctcgaaattaactgggtgttctgcatgtctgtagGCGTTGGATAAGATTAGGTTCCTTTCCCTTACTGATAAGGAAGTTTTGGGTGAAAGGGACACTGCAAAGCTTGAGATTCAG
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gtaagtattattttgtttgtttctaggaactttct---ttctgaag--ttgttacttaatggtaattctgcttgatttcagGCACTGGATAAGATTAGGTTCCTTTCCCTCACAGATAAGGAGATTTTAGGTGAAGGTGATACTGCAAAGCTTGATATCCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtttgttctacattgtggatgctcgaaattaactgggtgttctgcatgtctgtagGCGTTGGATAAGATTAGGTTCCTTTCCCTTACTGATAAGGAAGTTTTGGGTGAAAGGGACACTGCAAAGCTTGAGATTCAG
aattaac putative branch site (score: 2)
aaattaact TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtattacatactgacccctgtgtttgttctacattgtggatgctcgaaattaactgggtgttctgcatgtctgtagGCGTTGGATAAGATTAGGTTCCTTTCCCTTACTGATAAGGAAGTTTTGGGTGAAAGGGACACTGCAAAGCTTGAGATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG