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gtaagtttttatctctcccttataccagttttgtagaagtgtctgtttggcagtcattgcttacaacacactggaaacttcattaatatccattaattctttttactatagGTTATAGTCTCTGCAAGGAAGCCAGAATTTTTCCAGCTTTCACATCCATTGTATGAGGTTGTAACAGATGATGGACTGATGCGTCCCTGTTTTAAAGTAA
species | Zea mays |
transcript | GRMZM2G044819_T03 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GATCTGTTTGAAATG GTTATAGTCTCTGCAAGGAAGCCAGAATTTTTTCAGCTTTCACATCCATTGEST: gi|6101991|gb|AW126461.1|AW126461
genomic: GATCTGTTTGAAATGgtaagttttt ... tttactatagGTTATAGTCTCTGCAAGGAAGCCAGAATTTTTCCAGCTTTCACATCCATTG
EST: TCAATCGCTTTCTTCCTAATGATGTGGGATGGAGAGATCTGTTTGAAATG GTTATAGTCTCTGCAAGGAAGCCAGAATTTTTTCAGCTTTCACATCCATTGEST: gi|32833943|gb|CD973621.1|CD973621
genomic: TCAATCGCTTTCTTCCTAATGATGTGGGATGGAGAGATCTGTTTGAAATGgtaagttttt ... tttactatagGTTATAGTCTCTGCAAGGAAGCCAGAATTTTTCCAGCTTTCACATCCATTG
EST: TCAATCGCTTTCTTCCTAATGATGTGGGATGGAGAGATCTGTTTGAAATG GTTATAGTCTCTGCAAGGAAGCCAGAATTTTTTCAGCTTTCACATCCATTGEST: gi|32933142|gb|CF037954.1|CF037954
genomic: TCAATCGCTTTCTTCCTAATGATGTGGGATGGAGAGATCTGTTTGAAATGgtaagttttt ... tttactatagGTTATAGTCTCTGCAAGGAAGCCAGAATTTTTCCAGCTTTCACATCCATTG
EST: TCAATCGCTTTCTTCCTAATGATGTGGGATGGAGAGATCTGTTTGAAATG GTTATAGTCTCTGCAAGGAAGCCAGAATTTTTTCAGCTTTCACATCCATTG
genomic: TCAATCGCTTTCTTCCTAATGATGTGGGATGGAGAGATCTGTTTGAAATGgtaagttttt ... tttactatagGTTATAGTCTCTGCAAGGAAGCCAGAATTTTTCCAGCTTTCACATCCATTG
ttgcttacaacacactggaaacttcattaatatccattaattctttttactatagGTTATAGTCTCTGCAAGGAAGCCAGAATTTTTCCAGCTTTCACATCCATTGTATGAGGTTGTAACAGATGATGGACTGATGCGTCCCTGTTTTAAAGTAA
ttctttttact CT-rich tract
attaatatccattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttttatctctcccttataccagttttgtagaagtgtctgtttggcagtcattgcttacaacacactggaaacttcattaatatccattaattctttttactatagGTTATAGTCTCTGCAAGGAAGCCAGAATTTTTCCAGCTTTCACATCCATTGTATGAGGTTGTAACAGATGATGGACTGATGCGTCCCTGTTTTAAAGTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA