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...atcctacaacctcagtttctttcttcgatatgctcttgtctattatccactgccagttttgtgactgactcgctatcccttttatgaaatgggtatttagGTGGCTTATATTCTGGTGGTAGTGCTCAGATGGTTGAGAAATCACTAGACATTCATGGGGATGAGATATTATATGTTGGGGACCATATTTACACAGATGT
species | Zea mays |
transcript | GRMZM2G044819_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GGTTGTAACAGATGATGGACTGATGCGTCCCTGTTTTAAAGTAAATTCAG GTGGCTTATATTCTGGTGGTAGTGCTCAGATGGTTGAGAAATCACTAGACAEST: gi|32833943|gb|CD973621.1|CD973621
genomic: GGTTGTAACAGATGATGGACTGATGCGTCCCTGTTTTAAAGTAAATTCAGgtcagattct ... gggtatttagGTGGCTTATATTCTGGTGGTAGTGCTCAGATGGTTGAGAAATCACTAGACA
EST: GGTTGTAACAGATGATGGACTGATGCGTCCCTGTTTTAAAGTAAATTCAG GTGGCTTATATTCTGGTGGTAGTGCTCAGATGGTTGAGAAATCACTAGACAEST: gi|32933142|gb|CF037954.1|CF037954
genomic: GGTTGTAACAGATGATGGACTGATGCGTCCCTGTTTTAAAGTAAATTCAGgtcagattct ... gggtatttagGTGGCTTATATTCTGGTGGTAGTGCTCAGATGGTTGAGAAATCACTAGACA
EST: GGTTGTAACAGATGATGGACTGATGCGTCCCTGTTTTAAAGTAAATTCAG GTGGCTTATATTCTGGTGGTAGTGCTCAGATGGTTGAGAAATCACTAGACA
genomic: GGTTGTAACAGATGATGGACTGATGCGTCCCTGTTTTAAAGTAAATTCAGgtcagattct ... gggtatttagGTGGCTTATATTCTGGTGGTAGTGCTCAGATGGTTGAGAAATCACTAGACA
tccactgccagttttgtgactgactcgctatcccttttatgaaatgggtatttagGTGGCTTATATTCTGGTGGTAGTGCTCAGATGGTTGAGAAATCACTAGACATTCATGGGGATGAGATATTATATGTTGGGGACCATATTTACACAGATGT
gactgac putative branch site (score: 99)
ttttatgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcctacaacctcagtttctttcttcgatatgctcttgtctattatccactgccagttttgtgactgactcgctatcccttttatgaaatgggtatttagGTGGCTTATATTCTGGTGGTAGTGCTCAGATGGTTGAGAAATCACTAGACATTCATGGGGATGAGATATTATATGTTGGGGACCATATTTACACAGATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG