1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tacaaaattaaaacgagccgagtcgagccgagtcgagcgagttatcgagccacgagtattttgtccagctctacctgcaacatcgtcccacttgttccagGTGAAACAGAACACCGTGTCAAGGGAGCGTCAGAACGTTGAGCTTCTAGCAAGAGGGCGCCATGACCCATGCGTCGCCCCTCGAG
species | Zea mays |
transcript | GRMZM2G036861_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GTGAGATTGTGCACTTCAAAGTTGCTTTTAAGCCGACACCATCTATCGGG GTGAAACAGAACACCGTGTCAAGGGAGCGTCAGAACGTTGAGCTTCTAGCAEST: gi|148951093|gb|EC896758.2|EC896758
genomic: GTGAGATTGTGCACTTCAAAGTTGCTTTTAAGCCGACACCATCTATCGGGgtaaggcatt ... cttgttccagGTGAAACAGAACACCGTGTCAAGGGAGCGTCAGAACGTTGAGCTTCTAGCA
EST: GTGAGATTGTGCACTTCAAAGTTGCTTTTAAGCCGACACCATCTATCGGG GTGAAACAGAACACCGTGTCAAGGGAGCGTCAGAACGTTGAGCTTCTAGCAEST: gi|78109643|gb|DV528059.1|DV528059
genomic: GTGAGATTGTGCACTTCAAAGTTGCTTTTAAGCCGACACCATCTATCGGGgtaaggcatt ... cttgttccagGTGAAACAGAACACCGTGTCAAGGGAGCGTCAGAACGTTGAGCTTCTAGCA
EST: GTGAGATTGTGCACTTCAAAGTTGCTTTTAAGCCGACACCATCTATCGGG GTGAAACAGAACACCGTGTCAAGGGAGCGTCAGAACGTTGAGCTTCTAGCAEST: gi|211012763|gb|FL448392.1|FL448392
genomic: GTGAGATTGTGCACTTCAAAGTTGCTTTTAAGCCGACACCATCTATCGGGgtaaggcatt ... cttgttccagGTGAAACAGAACACCGTGTCAAGGGAGCGTCAGAACGTTGAGCTTCTAGCA
EST: GTGAGATTGTGCACTTCAAAGTTGCTTTTAAGCCGACACCATCTATCGGG GTGAAACAGAACACCGTGTCAAGGGAGCGTCAGAACGTTGAGCTTCTAGCAEST: gi|76281789|gb|DV021357.1|DV021357
genomic: GTGAGATTGTGCACTTCAAAGTTGCTTTTAAGCCGACACCATCTATCGGGgtaaggcatt ... cttgttccagGTGAAACAGAACACCGTGTCAAGGGAGCGTCAGAACGTTGAGCTTCTAGCA
EST: GTGAGATTGTGCACTTCAAAGTTGCTTTTAAGCCGACACCATCTATCGGG GTGAAACAGAACACCGTGTCAAGGGAGCGTCAGAACGTTGAGCTTCTAGCAEST: gi|148940355|gb|EC885142.2|EC885142
genomic: GTGAGATTGTGCACTTCAAAGTTGCTTTTAAGCCGACACCATCTATCGGGgtaaggcatt ... cttgttccagGTGAAACAGAACACCGTGTCAAGGGAGCGTCAGAACGTTGAGCTTCTAGCA
EST: GTGAGATTGTGCACTTCAAAGTTGCTTTTAAGCCGACACCATCTATCGGG GTGAAACAGAACACCGTGTCAAGGGAGCGTCAGAACGTTGAGCTTCTAGCAEST: gi|76934910|gb|DV174082.1|DV174082
genomic: GTGAGATTGTGCACTTCAAAGTTGCTTTTAAGCCGACACCATCTATCGGGgtaaggcatt ... cttgttccagGTGAAACAGAACACCGTGTCAAGGGAGCGTCAGAACGTTGAGCTTCTAGCA
EST: GTGAGATTGTGCACTTCAAAGTTGCTTTTAAGCCGACACCATCTATCGGG GTGAAACAGAACACCGTGTCAAGGGAGCGTCAGAACGTTGAGCTTCTAGCAEST: gi|149098824|gb|EE184837.2|EE184837
genomic: GTGAGATTGTGCACTTCAAAGTTGCTTTTAAGCCGACACCATCTATCGGGgtaaggcatt ... cttgttccagGTGAAACAGAACACCGTGTCAAGGGAGCGTCAGAACGTTGAGCTTCTAGCA
EST: GTGAGATTGTGCACTTCAAAGTTGCTTTTAAGCCGACACCATCTATCGGG GTGAAACAGAACACCGTGTCAAGGGAGCGTCAGAACGTTGAGCTTTTAGCA
genomic: GTGAGATTGTGCACTTCAAAGTTGCTTTTAAGCCGACACCATCTATCGGGgtaaggcatt ... cttgttccagGTGAAACAGAACACCGTGTCAAGGGAGCGTCAGAACGTTGAGCTTCTAGCA
cgagccacgagtattttgtccagctctacctgcaacatcgtcccacttgttccagGTGAAACAGAACACCGTGTCAAGGGAGCGTCAGAACGTTGAGCTTCTAGCAAGAGGGCGCCATGACCCATGCGTCGCCCCTCGAG
tcccactt CT-rich tract
agtatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacaaaattaaaacgagccgagtcgagccgagtcgagcgagttatcgagccacgagtattttgtccagctctacctgcaacatcgtcccacttgttccagGTGAAACAGAACACCGTGTCAAGGGAGCGTCAGAACGTTGAGCTTCTAGCAAGAGGGCGCCATGACCCATGCGTCGCCCCTCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
tacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - gccacga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgcaac