1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtactagatgtcgccatttagtgtgttgatgtatgtttgttgagtgtttaatttcgttgtcttctgttgctgcagAGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGCCCTTCTAGCTAGGATTCCCAGGACAGACTAGATAGAGCAGCTTTAACAGACTGAG
species | Zea mays |
transcript | GRMZM2G035150_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAG AGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGCCCTTCTEST: gi|78092883|gb|DV521257.1|DV521257
genomic: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAGgtactagatg ... gttgctgcagAGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGCCCTTCT
EST: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAG AGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGCCCTTCTEST: gi|4804174|gb|AI666040.1|AI666040
genomic: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAGgtactagatg ... gttgctgcagAGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGCCCTTCT
EST: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAG AGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGCCCTTCTEST: gi|32808275|gb|CD960509.1|CD960509
genomic: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAGgtactagatg ... gttgctgcagAGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGCCCTTCT
EST: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAG AGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGCCCTTCTEST: gi|76289426|gb|DV028994.1|DV028994
genomic: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAGgtactagatg ... gttgctgcagAGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGCCCTTCT
EST: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAG AGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGCCCTTCTEST: gi|71427953|gb|DR809003.1|DR809003
genomic: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAGgtactagatg ... gttgctgcagAGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGCCCTTCT
EST: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAG AGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGCCCTTCTEST: gi|32793686|gb|CD945922.1|CD945922
genomic: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAGgtactagatg ... gttgctgcagAGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGCCCTTCT
EST: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAG AGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGCCCTTCTEST: gi|86466720|gb|DY233090.1|DY233090
genomic: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAGgtactagatg ... gttgctgcagAGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGCCCTTCT
EST: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAG AGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGCCCTTCTEST: gi|71427180|gb|DR808230.1|DR808230
genomic: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAGgtactagatg ... gttgctgcagAGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGCCCTTCT
EST: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAG AGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGCCCTTCTEST: gi|50324081|gb|CO519207.1|CO519207
genomic: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAGgtactagatg ... gttgctgcagAGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGCCCTTCT
EST: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAG AGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGCCCTTCTEST: gi|50331811|gb|CO526937.1|CO526937
genomic: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAGgtactagatg ... gttgctgcagAGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGCCCTTCT
EST: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAG AGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGCCCTTTTEST: gi|78080763|gb|DV509175.1|DV509175
genomic: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAGgtactagatg ... gttgctgcagAGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGCCCTTCT
EST: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAG AGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGCCCTTCTEST: gi|24462661|gb|BM660192.1|BM660192
genomic: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAGgtactagatg ... gttgctgcagAGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGCCCTTCT
EST: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAG AGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGTCCTTCTEST: gi|50327716|gb|CO522842.1|CO522842
genomic: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAGgtactagatg ... gttgctgcagAGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGCCCTTCT
EST: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAG AGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGCCCTTCT
genomic: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAGgtactagatg ... gttgctgcagAGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGCCCTTCT
gtgtgttgatgtatgtttgttgagtgtttaatttcgttgtcttctgttgctgcagAGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGCCCTTCTAGCTAGGATTCCCAGGACAGACTAGATAGAGCAGCTTTAACAGACTGAG
gtttaat putative branch site (score: 4)
tcttctgtt putative PPT
tgtttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactagatgtcgccatttagtgtgttgatgtatgtttgttgagtgtttaatttcgttgtcttctgttgctgcagAGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGCCCTTCTAGCTAGGATTCCCAGGACAGACTAGATAGAGCAGCTTTAACAGACTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT