1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaaaacacacacgttctcttatctgtgttactaactagttggcttggtgcaacatactccactgctgtactgattgctatgcaggttatagaactaaacctcatgccaactttgcagGTTATCAGCAAAGTTGGTGACCTTGTGGGTATCAAATACTTCCCGGTTGAGCAAGAAAAGACCACGGCTGTTGAAAATCTGAAGAAAATTCAATGAACAA
species | Zea mays |
transcript | GRMZM2G010202_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TATGTATCTCAGCTTCCCACTCCAGGGAAGATCTCATAAAAGGATTGGAG GTTATCAGCAAAGTTGGTGACCTTGTGGGTATCAAATACTTCCCGGTTGAGEST: gi|86467008|gb|DY233378.1|DY233378
genomic: TATGTATCTCAGCTTCCCACTCCAGGGAAGATCTCATAAAAGGATTGGAGgtaaaacaca ... aactttgcagGTTATCAGCAAAGTTGGTGACCTTGTGGGTATCAAATACTTCCCGGTTGAG
EST: TATGTATCTCAGCTTCCCACTCCAGGGAAGATCTCATAAAAGGATTGGAG GTTATCAGCAAAGTTGGTGACCTTGTGGGTATCAAATACTTCCCGGTTGAGEST: gi|148947745|gb|EC893228.2|EC893228
genomic: TATGTATCTCAGCTTCCCACTCCAGGGAAGATCTCATAAAAGGATTGGAGgtaaaacaca ... aactttgcagGTTATCAGCAAAGTTGGTGACCTTGTGGGTATCAAATACTTCCCGGTTGAG
EST: TATGTATCTCAGCTTCCCACTCCAGGGAAGATCTCATAAAAGGATTGGAG GTTATCAGCAAAGTTGGTGACCTTGTGGGTATCAAATACTTCCCGGTTGAGEST: gi|37374692|gb|CF623727.1|CF623727
genomic: TATGTATCTCAGCTTCCCACTCCAGGGAAGATCTCATAAAAGGATTGGAGgtaaaacaca ... aactttgcagGTTATCAGCAAAGTTGGTGACCTTGTGGGTATCAAATACTTCCCGGTTGAG
EST: TATGTATCTCAGCTTCCCACTCCAGGGAAGATCTCATAAAAGGATTGGAG GTTATCAGCAAAGTTGGTGACCTTGTGGGTATCAAATACTTCCCGGTTGAGEST: gi|101393459|gb|EB818661.1|EB818661
genomic: TATGTATCTCAGCTTCCCACTCCAGGGAAGATCTCATAAAAGGATTGGAGgtaaaacaca ... aactttgcagGTTATCAGCAAAGTTGGTGACCTTGTGGGTATCAAATACTTCCCGGTTGAG
EST: TATGTATTTCAGCTTCCCACTCCAGGGAAGATCTCATAAAAGGATTGGAG GTTATCAGCAAAGTTGGTGACCTTGTGGGTATCAAATACTTCCCGGTTGAGEST: gi|211322417|gb|FL451105.1|FL451105
genomic: TATGTATCTCAGCTTCCCACTCCAGGGAAGATCTCATAAAAGGATTGGAGgtaaaacaca ... aactttgcagGTTATCAGCAAAGTTGGTGACCTTGTGGGTATCAAATACTTCCCGGTTGAG
EST: TATGTATCTCAGCTTCCCACTCCAGGGAAGATCTCATAAAAGGATTGGAG GTTATCAGCAAAGTTGGTGACCTTGTGGGTATCAAATACTTCCCGGTTGAGEST: gi|211322418|gb|FL451106.1|FL451106
genomic: TATGTATCTCAGCTTCCCACTCCAGGGAAGATCTCATAAAAGGATTGGAGgtaaaacaca ... aactttgcagGTTATCAGCAAAGTTGGTGACCTTGTGGGTATCAAATACTTCCCGGTTGAG
EST: TATGTATCTCAGCTTCCCACTCCAGGGAAGATCTCATAAAAGGATTGGAG GTTATCAGCAAAGTTGGTGACCTTGTGGGTATCAAATACTTCCCGGTTGAG
genomic: TATGTATCTCAGCTTCCCACTCCAGGGAAGATCTCATAAAAGGATTGGAGgtaaaacaca ... aactttgcagGTTATCAGCAAAGTTGGTGACCTTGTGGGTATCAAATACTTCCCGGTTGAG
tgctgtactgattgctatgcaggttatagaactaaacctcatgccaactttgcagGTTATCAGCAAAGTTGGTGACCTTGTGGGTATCAAATACTTCCCGGTTGAGCAAGAAAAGACCACGGCTGTTGAAAATCTGAAGAAAATTCAATGAACAA
aactaaa putative branch site (score: 2)
ttatagaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaacacacacgttctcttatctgtgttactaactagttggcttggtgcaacatactccactgctgtactgattgctatgcaggttatagaactaaacctcatgccaactttgcagGTTATCAGCAAAGTTGGTGACCTTGTGGGTATCAAATACTTCCCGGTTGAGCAAGAAAAGACCACGGCTGTTGAAAATCTGAAGAAAATTCAATGAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA