Sequence
atgc intronic sequence ATGC exonic sequence...gcaagataaatgctcgccccgctcttttgtttgcttgcttgtttgtttgtttcccactttttggggaagaattgagggaattttttgtgttgatggccagGCGGTCTTGAGGACGAGGAGCTACAGGTGCAGGATGCAGTTGCCAGTGGTTCCAAGAGGAGCAAAGACTCTGCCGCCGCCGCCGCCGCCACACGCAGCGC
Basic information
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttgtttcccactttttggggaagaattgagggaattttttgtgttgatggccagGCGGTCTTGAGGACGAGGAGCTACAGGTGCAGGATGCAGTTGCCAGTGGTTCCAAGAGGAGCAAAGACTCTGCCGCCGCCGCCGCCGCCACACGCAGCGC
tgttgat putative branch site (score: 4)
aattttttgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcaagataaatgctcgccccgctcttttgtttgcttgcttgtttgtttgtttcccactttttggggaagaattgagggaattttttgtgttgatggccagGCGGTCTTGAGGACGAGGAGCTACAGGTGCAGGATGCAGTTGCCAGTGGTTCCAAGAGGAGCAAAGACTCTGCCGCCGCCGCCGCCGCCACACGCAGCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- aagataaa
- - - - - tgctcgc
- - - - - - - - - - - - ttttgtt
- - - - - - - - - - - - - - - -tgcttgc