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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtacctttcgcgccactcgctcggctccgacgtttttggccgcatcagcaataacccatcaacaaattgccgcaacacgtgtggtccctcccaaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCATGGGCAACGTCCTCAGCGCCAACCTTGGCCAGGCTCCGGCAAGGCAGGC

Basic information

species Zea mays
transcript GRMZM5G860137_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G860137_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g02020.1 (Oryza sativa), 3'ss of exon 1
gtacgtacctttcgcgccactcgctcggctccgacgtttttggccgcat-cagcaataacccatcaacaaattgccgcaacacgtgtggtccctcccaaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCATGGGCAACGTCCTCAGCGCCAACCTTGGCCAGGCTCCGGCAAGGCAGGC
                        |   ||||   | |  |  | |  | |  |       | ||    |||  |||         || | || | |||   ||||  ||||||| ||| || || || || |||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| || ||||| ||||| ||
-----------------------gtaaactccagtgctcctctcagttttcttctcctcttcctctctgaat--ccgatttggccatgcttccccacaa---ccagCCGCTCTCAGGAGAGCAAATGTGGAGCCGGCGCTCGTGCAGGAGGTCTTCATGGGGAACGTTCTCAGCGCCAACCTTGGCCAAGCCCCGGCGAGGCAAGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149107172|gb|EE189058.2|EE189058
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|93281948|gb|EB674212.1|EB674212
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|91051495|gb|EB161913.1|EB161913
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|149110543|gb|EE190473.2|EE190473
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|149087112|gb|EE176651.2|EE176651
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|211136636|gb|FL389507.1|FL389507
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|78087866|gb|DV516259.1|DV516259
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|71426143|gb|DR807193.1|DR807193
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|71439486|gb|DR820536.1|DR820536
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|149084568|gb|EE174037.2|EE174037
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|20803192|gb|BQ294242.1|BQ294242
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|89248149|gb|DY619935.1|DY619935
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|149000558|gb|EE037748.2|EE037748
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|89248499|gb|DY620285.1|DY620285
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|37419864|gb|CF647618.1|CF647618
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|149083757|gb|EE173120.2|EE173120
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|93016086|gb|EB641606.1|EB641606
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|148945943|gb|EC891236.2|EC891236
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|148947617|gb|EC893097.2|EC893097
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|149008549|gb|EE040725.2|EE040725
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|211403233|gb|FL400076.1|FL400076
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCATGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|86475370|gb|DY241740.1|DY241740
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCAAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|148939632|gb|EC884275.2|EC884275
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|89760643|gb|DY688974.1|DY688974
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|211024306|gb|FL368563.1|FL368563
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|50337630|gb|CO532756.1|CO532756
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|149071725|gb|EE160115.2|EE160115
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|71442414|gb|DR823464.1|DR823464
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|78085615|gb|DV514008.1|DV514008
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|211111975|gb|FL386052.1|FL386052
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|149067527|gb|EE157733.2|EE157733
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|78078473|gb|DV506886.1|DV506886
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|76914731|gb|DV165656.1|DV165656
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|71298333|gb|DR785148.1|DR785148
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|50322372|gb|CO517498.1|CO517498
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: gi|149029957|gb|EE286286.2|EE286286
EST:     GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG                         GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcaataacccatcaacaaattgccgcaacacgtgtggtccctcccaaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCATGGGCAACGTCCTCAGCGCCAACCTTGGCCAGGCTCCGGCAAGGCAGGC
  caataac  putative branch site (score: 2)
                                      tccctccc  putative PPT
              aacaaatt  TA-rich tract