1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgcgccgccgcctccgccgccgccgctgtttaaccgtctgcccatgtggtgtctgcgctcatgctcccgcttcatttttctttgcagTTCTTCGTCGGAGGCAACTGGAAGTGC
species | Zea mays |
transcript | GRMZM5G852968_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAG TTCTTCGTCGGAGGCAACTGGAAGTGCEST: gi|101387332|gb|EB815682.1|EB815682
genomic: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAGgtgcgccgcc ... ttctttgcagTTCTTCGTCGGAGGCAACTGGAAGTGC
EST: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAG TTCTTCGTCGGAGGCAACTGGAAGTGCEST: gi|76014692|gb|DT941862.1|DT941862
genomic: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAGgtgcgccgcc ... ttctttgcagTTCTTCGTCGGAGGCAACTGGAAGTGC
EST: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAG TTCTTCGTCGGAGGCAACTGGAAGTGCEST: gi|149089024|gb|EE178175.2|EE178175
genomic: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAGgtgcgccgcc ... ttctttgcagTTCTTCGTCGGAGGCAACTGGAAGTGC
EST: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAG TTCTTCGTCGGAGGCAACTGGAAGTGCEST: gi|50337624|gb|CO532750.1|CO532750
genomic: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAGgtgcgccgcc ... ttctttgcagTTCTTCGTCGGAGGCAACTGGAAGTGC
EST: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAG TTCTTCGTCGGAGGCAACTGGAAGTGCEST: gi|78089192|gb|DV517576.1|DV517576
genomic: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAGgtgcgccgcc ... ttctttgcagTTCTTCGTCGGAGGCAACTGGAAGTGC
EST: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAG TTCTTCGTCGGAGGCAACTGGAAGTGCEST: gi|71439314|gb|DR820364.1|DR820364
genomic: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAGgtgcgccgcc ... ttctttgcagTTCTTCGTCGGAGGCAACTGGAAGTGC
EST: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAG TTCTTCGTCGGAGGCAACTGGAAGTGCEST: gi|148949372|gb|EC894828.2|EC894828
genomic: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAGgtgcgccgcc ... ttctttgcagTTCTTCGTCGGAGGCAACTGGAAGTGC
EST: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAG TTCTTCGTCGGAGGCAACTGGAAGTGCEST: gi|148990724|gb|EE032131.2|EE032131
genomic: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAGgtgcgccgcc ... ttctttgcagTTCTTCGTCGGAGGCAACTGGAAGTGC
EST: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAG TTCTTCGTCGGAGGCAACTGGAAGTGCEST: gi|211138817|gb|FL315878.1|FL315878
genomic: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAGgtgcgccgcc ... ttctttgcagTTCTTCGTCGGAGGCAACTGGAAGTGC
EST: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAG TTCTTCGTCGGAGGCAACTGGAAGTGCEST: gi|149101112|gb|EE187218.2|EE187218
genomic: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAGgtgcgccgcc ... ttctttgcagTTCTTCGTCGGAGGCAACTGGAAGTGC
EST: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAG TTCTTCGTCGGAGGCAACTGGAAGTGCEST: gi|13126490|gb|BG317060.1|BG317060
genomic: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAGgtgcgccgcc ... ttctttgcagTTCTTCGTCGGAGGCAACTGGAAGTGC
EST: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAG TTCTTCGTCGGAGGCAACTGGAAGTGCEST: gi|71301510|gb|DR786796.1|DR786796
genomic: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAGgtgcgccgcc ... ttctttgcagTTCTTCGTCGGAGGCAACTGGAAGTGC
EST: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAG TTCTTCGTCGGAGGCAACTGGAAGTGCEST: gi|71436978|gb|DR818028.1|DR818028
genomic: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAGgtgcgccgcc ... ttctttgcagTTCTTCGTCGGAGGCAACTGGAAGTGC
EST: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAG TTCTTCGTCGGAGGCAACTGGAAGTGCEST: gi|148987083|gb|EE030908.2|EE030908
genomic: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAGgtgcgccgcc ... ttctttgcagTTCTTCGTCGGAGGCAACTGGAAGTGC
EST: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAG TTCTTCGTCGGAGGCAACTGGAAGTGCEST: gi|148945255|gb|EC890464.2|EC890464
genomic: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAGgtgcgccgcc ... ttctttgcagTTCTTCGTCGGAGGCAACTGGAAGTGC
EST: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAG TTCTTCGTCGGAGGCAACTGGAAGTGCEST: gi|91877369|gb|EB407326.1|EB407326
genomic: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAGgtgcgccgcc ... ttctttgcagTTCTTCGTCGGAGGCAACTGGAAGTGC
EST: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAG TTCTTCGTCGGAGGCAACTGGAAGTGCEST: gi|148942891|gb|EC887934.2|EC887934
genomic: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAGgtgcgccgcc ... ttctttgcagTTCTTCGTCGGAGGCAACTGGAAGTGC
EST: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAG TTCTTCGTCGGAGGCAACTGGAAGTGCEST: gi|91049452|gb|EB159870.1|EB159870
genomic: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAGgtgcgccgcc ... ttctttgcagTTCTTCGTCGGAGGCAACTGGAAGTGC
EST: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAG TTCTTCGTCGGAGGCAACTGGAAGTGCEST: gi|78089320|gb|DV517694.1|DV517694
genomic: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAGgtgcgccgcc ... ttctttgcagTTCTTCGTCGGAGGCAACTGGAAGTGC
EST: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAG TTCTTCGTCGGAGGCAACTGGAAGTGCEST: gi|149111298|gb|EE294796.2|EE294796
genomic: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAGgtgcgccgcc ... ttctttgcagTTCTTCGTCGGAGGCAACTGGAAGTGC
EST: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAG TTCTTCGTCGGAGGCAACTGGAAGTGCEST: gi|76011527|gb|DT938697.1|DT938697
genomic: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAGgtgcgccgcc ... ttctttgcagTTCTTCGTCGGAGGCAACTGGAAGTGC
EST: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAG TTCTTCGTCGGAGGCAACTGGAAGTGCEST: gi|71319071|gb|DR796286.1|DR796286
genomic: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAGgtgcgccgcc ... ttctttgcagTTCTTCGTCGGAGGCAACTGGAAGTGC
EST: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAG TTCTTCGTCGGAGGCAACTGGAAGTGC
genomic: TCTCGCGCCGCCGCGCCCAGCGCGTCGTCGCCATGGCTGGATCCGGCAAGgtgcgccgcc ... ttctttgcagTTCTTCGTCGGAGGCAACTGGAAGTGC
accgtctgcccatgtggtgtctgcgctcatgctcccgcttcatttttctttgcagTTCTTCGTCGGAGGCAACTGGAAGTGC
gtttaac putative branch site (score: 3)
tgctcccgcttcattt putative PPT
atttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgccgccgcctccgccgccgccgctgtttaaccgtctgcccatgtggtgtctgcgctcatgctcccgcttcatttttctttgcagTTCTTCGTCGGAGGCAACTGGAAGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG