Sequence
atgc intronic sequence ATGC exonic sequencegtgcagttgaccctgacttagtgttgggtgtgttttctcttatgtttgcagcttctacagttctagcgcatataatttgttgctatcaattaattctggtagtgacaaatgaaccactgctttctagtgacactgatatgtttatatgcagCTCTTCAAATGTCTGTCCAGGATGCAAACATGTCCAGTGACACTGATATGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G700055_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g13970.1 (Oryza sativa), 3'ss of exon 7
gtgcagttgaccctgacttagtgttgggtgtgttttctcttatgtttgcagcttctacagttctagcgcatataatttgttgctatcaatta-attctggtagtgacaaatgaaccactgctttctagtgacactgatatg-tttatatgcagCTCTTCAAATGTCTGTCCAGGATGCAAACATGTCCAGTGACACTGATATGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGGT
| ||| | || || | | | ||| | || | ||| | | | || | || | | || || || || ||| | |||||||||||||||||||||||||| ||| | ||| ||| | |||||||||| |||||||||||||||||| | ||||| |||| |||||||| ||
-------------------------------------------------acaagcta-acttgtaaagaaaagctcagcatgcaaagaaacacatttagacatttccatgc---tctttggtctgatgtttaaccaatttgatttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT-- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tggtagtgacaaatgaaccactgctttctagtgacactgatatgtttatatgcagCTCTTCAAATGTCTGTCCAGGATGCAAACATGTCCAGTGACACTGATATGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGGT
cactgat putative branch site (score: 3)
tgatatgtttatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgcagttgaccctgacttagtgttgggtgtgttttctcttatgtttgcagcttctacagttctagcgcatataatttgttgctatcaattaattctggtagtgacaaatgaaccactgctttctagtgacactgatatgtttatatgcagCTCTTCAAATGTCTGTCCAGGATGCAAACATGTCCAGTGACACTGATATGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA