1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...catgctgttgtttgaagcttctagttaaatacttagactattgcacaatcatttcatttgtcgctctctaacgtttccatttcctttttgcgttctttagCATACAGTGCCAGACAGGATACCCACACATTCATGGAGGTGGTTCAAGAAGTCCTTAGGCATGGCTCAGCAGATAGTGTCCGTGCTGTCATAAGAGCTAA
species | Zea mays |
transcript | GRMZM2G460078_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCTCGCCTCCGACGCCACTTCACCTCTTCTGCTTCCTTCTCCCCAG CATACAGTGCCAGACAGGATACCCACACATTCATGGAGGTGGTTCAAGAAGEST: gi|91049611|gb|EB160029.1|EB160029
genomic: CGCTCGCCTCCGACGCCACTTCACCTCTTCTGCTTCCTTCTCCCCAGgtcggctatt ... cgttctttagCATACAGTGCCAGACAGGATACCCACACATTCATGGAGGTGGTTCAAGAAG
EST: TCTCGCTCGCCTCCGACGCCACTTCACCTCTTCTGCTTCCTTCTCCCCAG CATACAGTGCCAGACAGGATACCCACACATTCATGGAGGTGGTTCAAGAAGEST: gi|211025828|gb|FK982703.1|FK982703
genomic: TCTCGCTCGCCTCCGACGCCACTTCACCTCTTCTGCTTCCTTCTCCCCAGgtcggctatt ... cgttctttagCATACAGTGCCAGACAGGATACCCACACATTCATGGAGGTGGTTCAAGAAG
EST: ACTTCACCTCTTCTGCTTCCTTCTCCCCAG CATACAGTGCCAGACAGGATACCCACACATTCATGGAGGTGGTTCAAGAAGEST: gi|211025826|gb|FK982701.1|FK982701
genomic: ACTTCACCTCTTCTGCTTCCTTCTCCCCAGgtcggctatt ... cgttctttagCATACAGTGCCAGACAGGATACCCACACATTCATGGAGGTGGTTCAAGAAG
EST: TCTCGCTCGCCTCCGACGCCACTTCACCTCTTCTGCTTCCTTCTCCCCAG CATACAGTGCCAGACAGGATACCCACACATTCATGGAGGTGGTTCAAGAAGEST: gi|211025831|gb|FK982706.1|FK982706
genomic: TCTCGCTCGCCTCCGACGCCACTTCACCTCTTCTGCTTCCTTCTCCCCAGgtcggctatt ... cgttctttagCATACAGTGCCAGACAGGATACCCACACATTCATGGAGGTGGTTCAAGAAG
EST: ACTTCACCTCTTCTGCTTCCTTCTCCCCAG CATACAGGTGCCAGACAGGATACCCACACATTCATGGAGGTGGTTCAAGAAEST: gi|71434528|gb|DR815578.1|DR815578
genomic: ACTTCACCTCTTCTGCTTCCTTCTCCCCAGgtcggctatt ... cgttctttagCATACA-GTGCCAGACAGGATACCCACACATTCATGGAGGTGGTTCAAGAA
EST: CTTCCTTCTCCCCAG CATACAGTGCCAGACAGGATACCCACACATTCATGGAGGTGGTTCAAGAAGEST: gi|71332183|gb|DR803010.1|DR803010
genomic: CTTCCTTCTCCCCAGgtcggctatt ... cgttctttagCATACAGTGCCAGACAGGATACCCACACATTCATGGAGGTGGTTCAAGAAG
EST: TCTCGCTCGCCTCCGACGCCACTTCACCTCTTCTGCTTCCTTCTCCCCAG CATACAGTGCCAGACAGGATACCCACACATTCATGGAGGTGGTTCAAGAAGEST: gi|211025829|gb|FK982704.1|FK982704
genomic: TCTCGCTCGCCTCCGACGCCACTTCACCTCTTCTGCTTCCTTCTCCCCAGgtcggctatt ... cgttctttagCATACAGTGCCAGACAGGATACCCACACATTCATGGAGGTGGTTCAAGAAG
EST: TCTCGCTCGCCTCCGACGCCACTTCACCTCTTCTGCTTCCTTCTCCCCAG CATACAGTGCCAGACAGGATACCCACACATTCATGGAGGTGGTTCAAGAAGEST: gi|93012882|gb|EB638402.1|EB638402
genomic: TCTCGCTCGCCTCCGACGCCACTTCACCTCTTCTGCTTCCTTCTCCCCAGgtcggctatt ... cgttctttagCATACAGTGCCAGACAGGATACCCACACATTCATGGAGGTGGTTCAAGAAG
EST: GCTTCCTTCTCCCCAG CATACAGTGCCAGACAGGATACCCACACATTCATGGAGGTGGTTCAAGAAGEST: gi|148961982|gb|EE012780.2|EE012780
genomic: GCTTCCTTCTCCCCAGgtcggctatt ... cgttctttagCATACAGTGCCAGACAGGATACCCACACATTCATGGAGGTGGTTCAAGAAG
EST: TCTCGCTCGCCTCCGACGCCACTTCACCTCTTCTGCTTCCTTCTCCCCAG CATACAGTGCCAGACAGGATACCCACACATTCATGGAGGTGGTTCAAGAAGEST: gi|211025830|gb|FK982705.1|FK982705
genomic: TCTCGCTCGCCTCCGACGCCACTTCACCTCTTCTGCTTCCTTCTCCCCAGgtcggctatt ... cgttctttagCATACAGTGCCAGACAGGATACCCACACATTCATGGAGGTGGTTCAAGAAG
EST: ACTTCACCTCTTCTGCTTCCTTCTCCCCAG CATACAGTGCCAGACAGGATACCCACACATTCATGGAGGTGGTTCAAGAAG
genomic: ACTTCACCTCTTCTGCTTCCTTCTCCCCAGgtcggctatt ... cgttctttagCATACAGTGCCAGACAGGATACCCACACATTCATGGAGGTGGTTCAAGAAG
caatcatttcatttgtcgctctctaacgtttccatttcctttttgcgttctttagCATACAGTGCCAGACAGGATACCCACACATTCATGGAGGTGGTTCAAGAAGTCCTTAGGCATGGCTCAGCAGATAGTGTCCGTGCTGTCATAAGAGCTAA
ctctaac putative branch site (score: 804)
cgtttccatttccttt CT-rich tract
atttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgctgttgtttgaagcttctagttaaatacttagactattgcacaatcatttcatttgtcgctctctaacgtttccatttcctttttgcgttctttagCATACAGTGCCAGACAGGATACCCACACATTCATGGAGGTGGTTCAAGAAGTCCTTAGGCATGGCTCAGCAGATAGTGTCCGTGCTGTCATAAGAGCTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT