1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttgttgtgtaaccttgggggtacggcagtctctaactgatcacgtggcttaaaattgaatgtggccattctcagctgttgtgtgtgatgatgctttgtagGTTGGAAGCAGGCTTGCCTGGAGCAGGAACTATGCTGCGAAGGACATCAAGTTTGGTGTTGAGGCCCGTGCTCTGATGTTGAGGGGTGTTGAGGAGTTGG
species | Zea mays |
transcript | GRMZM2G458208_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCTCGCCTCCAAGGCGCGGCAAGCCGGGAACAGCCTCGCCGCCCGCCAG GTTGGAAGCAGGCTTGCCTGGAGCAGGAATTATGCTGCGAAGGACATCAAGEST: gi|89754394|gb|DY685176.1|DY685176
genomic: GCCTCGCCTCCAAGGCGCGGCAAGCCGGGAACAGCCTCGCCACCCGCCAGgtgagagcag ... tgctttgtagGTTGGAAGCAGGCTTGCCTGGAGCAGGAACTATGCTGCGAAGGACATCAAG
EST: GCCTCGCCTCCAAGGCGCGGCAAGCCGGGAACAGCCTCGCCACCCGCCAG GTTGGAAGCAGGCTTGCCTGGAGCAGGAACTATGCTGCGAAGGACATCAAGEST: gi|88747169|gb|DY531310.1|DY531310
genomic: GCCTCGCCTCCAAGGCGCGGCAAGCCGGGAACAGCCTCGCCACCCGCCAGgtgagagcag ... tgctttgtagGTTGGAAGCAGGCTTGCCTGGAGCAGGAACTATGCTGCGAAGGACATCAAG
EST: GCCTCGCCTCCAAGGCGCGGCAAGCCGGGAACAGCCTCGCCACCCGCCAG GTTGGAAGCAGGCTTGCCTGGAGCAGGAACTATGCTGCGAAGGACATCAAGEST: gi|31441079|gb|CD510510.1|CD510510
genomic: GCCTCGCCTCCAAGGCGCGGCAAGCCGGGAACAGCCTCGCCACCCGCCAGgtgagagcag ... tgctttgtagGTTGGAAGCAGGCTTGCCTGGAGCAGGAACTATGCTGCGAAGGACATCAAG
EST: ACAGCCTCGCCACCCGCCAG GTTGGAAGCAGGCTTGCCTGGAGCAGGAACTATGCTGCGAAGGACATCAAGEST: gi|31349389|gb|CD433746.1|CD433746
genomic: ACAGCCTCGCCACCCGCCAGgtgagagcag ... tgctttgtagGTTGGAAGCAGGCTTGCCTGGAGCAGGAACTATGCTGCGAAGGACATCAAG
EST: GCCTCGCCTCCAAGGCGCGGCAAGCCGGGAACAGCCTCGCCGCCCGCCAG GTTGGAAGCAGGCTTGCCTGGAGCAGGAATTATGCTGCGAAGGACATCAAGEST: gi|94476466|gb|EB705424.1|EB705424
genomic: GCCTCGCCTCCAAGGCGCGGCAAGCCGGGAACAGCCTCGCCACCCGCCAGgtgagagcag ... tgctttgtagGTTGGAAGCAGGCTTGCCTGGAGCAGGAACTATGCTGCGAAGGACATCAAG
EST: GCCTCGCCTCCAAGGCGCGGCAAGCCGGGAACAGCCTCGCCACCCGCCAG GTTGGAAGCAGGCTTGCCTGGAGCAGGAACTATGCTGCGAAGGACATCAAGEST: gi|26557261|gb|CA829496.1|CA829496
genomic: GCCTCGCCTCCAAGGCGCGGCAAGCCGGGAACAGCCTCGCCACCCGCCAGgtgagagcag ... tgctttgtagGTTGGAAGCAGGCTTGCCTGGAGCAGGAACTATGCTGCGAAGGACATCAAG
EST: GCCTCGCCTCCAAGGCGCGGCAAGCCGGGAACAGCCTCGCCACCCGCCAG GGTGGAAAG-AGGGCTTTGCCTGGAGCAGGAACTATGCTGCGAAGGACATCEST: gi|31355665|gb|CD440022.1|CD440022
genomic: GCCTCGCCTCCAAGGCGCGGCAAGCCGGGAACAGCCTCGCCACCCGCCAGgtgagagcag ... tgctttgtagGTTGG-AAGCA-GGC-TTGCCTGGAGCAGGAACTATGCTGCGAAGGACATC
EST: GCCTCGCCTCCAAGGCGCGGCAAGCCGGGAACAGCCTCGCCGCCCGCCAG GTTGGAAGCAGGCTTGCCTGGAGCAGGAATTATGCTGCGAAGGACATCAAGEST: gi|8367181|gb|BE050126.1|BE050126
genomic: GCCTCGCCTCCAAGGCGCGGCAAGCCGGGAACAGCCTCGCCACCCGCCAGgtgagagcag ... tgctttgtagGTTGGAAGCAGGCTTGCCTGGAGCAGGAACTATGCTGCGAAGGACATCAAG
EST: GCCTCGCCTCCAAGGCGCGGCAAGCCGGGAACAGCCTCGCCACCCGCCAG GTTGGAAGCAGGCTTGCCTGGAGCAGGAACTATGCTGCGAAGGACATCAAG
genomic: GCCTCGCCTCCAAGGCGCGGCAAGCCGGGAACAGCCTCGCCACCCGCCAGgtgagagcag ... tgctttgtagGTTGGAAGCAGGCTTGCCTGGAGCAGGAACTATGCTGCGAAGGACATCAAG
ggcttaaaattgaatgtggccattctcagctgttgtgtgtgatgatgctttgtagGTTGGAAGCAGGCTTGCCTGGAGCAGGAACTATGCTGCGAAGGACATCAAGTTTGGTGTTGAGGCCCGTGCTCTGATGTTGAGGGGTGTTGAGGAGTTGG
aaaattgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgttgtgtaaccttgggggtacggcagtctctaactgatcacgtggcttaaaattgaatgtggccattctcagctgttgtgtgtgatgatgctttgtagGTTGGAAGCAGGCTTGCCTGGAGCAGGAACTATGCTGCGAAGGACATCAAGTTTGGTGTTGAGGCCCGTGCTCTGATGTTGAGGGGTGTTGAGGAGTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
ttgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - ttgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgatg