1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaggtgacctatcagcctcgccggcgcgcgctgtttttctggctgcagcttccccataggtcagtagtatgcttttcttggcgtgtctgactgggggtcttcgcagcacagCCTGTACTACACCCGGATCGAGATCGGCTCGCCGCCCAAGGGCTACTACGTGCAGGTGGACACCGGCAGCGATATCCTCTGGGTCAACTGCATCCGCTGC
species | Zea mays |
transcript | GRMZM2G411333_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCGCCGTCGACTTGGCCCTCGGCGGCGTCGGGCTCCC-ACAGATACCGG CCTGTACTACACCCGGATCGAGATCGGCTCGCCGCCCAAGGGCTACTACGTEST: gi|71329431|gb|DR801432.1|DR801432
genomic: GGCGCCGTCGACTTGGCCCTCGGCGGCGTCGGGCTCCCCACAGATACCGGgtaggtgacc ... cgcagcacagCCTGTACTACACCCGGATCGAGATCGGCTCGCCGCCCAAGGGCTACTACGT
EST: GGCGCCGTCGACTTGGCCCTCGGCGGCGTCGGGCTCCCCACAGATACCGG CCTGTACTACACCCGGATCGAGATCGGCTCGCCGCCCAAGGGCTACTACGTEST: gi|94472394|gb|EB701352.1|EB701352
genomic: GGCGCCGTCGACTTGGCCCTCGGCGGCGTCGGGCTCCCCACAGATACCGGgtaggtgacc ... cgcagcacagCCTGTACTACACCCGGATCGAGATCGGCTCGCCGCCCAAGGGCTACTACGT
EST: GGCGCCGTCGACTTGGCCCTCGGCGGCGTCGGGCTCCCCACAGATACCGG CCTGTACTACACCCGGATCGAGATCGGCTCGCCGCCCAAGGGCTACTACGTEST: gi|148946390|gb|EC891698.2|EC891698
genomic: GGCGCCGTCGACTTGGCCCTCGGCGGCGTCGGGCTCCCCACAGATACCGGgtaggtgacc ... cgcagcacagCCTGTACTACACCCGGATCGAGATCGGCTCGCCGCCCAAGGGCTACTACGT
EST: GGCGCCGTCGACTTGGCCCTCGGCGGCGTCGGGCTCCCCACAGATACCGG CCTGTACTACACCCGGATCGAGATCGGCTCGCCGCCCAAGGGCTACTACGTEST: gi|71443428|gb|DR824478.1|DR824478
genomic: GGCGCCGTCGACTTGGCCCTCGGCGGCGTCGGGCTCCCCACAGATACCGGgtaggtgacc ... cgcagcacagCCTGTACTACACCCGGATCGAGATCGGCTCGCCGCCCAAGGGCTACTACGT
EST: GGCGCCGTCGACTTGGCCCTCGGCGGCGTCGGGCTCCCCACAGATACCGG CCTGTACTACACCCGGATCGAGATCGGCTCGCCGCCCAAGGGCTACTACGTEST: gi|71309094|gb|DR790817.1|DR790817
genomic: GGCGCCGTCGACTTGGCCCTCGGCGGCGTCGGGCTCCCCACAGATACCGGgtaggtgacc ... cgcagcacagCCTGTACTACACCCGGATCGAGATCGGCTCGCCGCCCAAGGGCTACTACGT
EST: GGCGCCGTCGACTTGGCCCTCGGCGGCGTCGGGCTCCCCACAGATACCGG CCTGTACTACACCCGGATCGAGATCGGCTCGCCGCCCAAGGGCTACTACGTEST: gi|31356527|gb|CD440884.1|CD440884
genomic: GGCGCCGTCGACTTGGCCCTCGGCGGCGTCGGGCTCCCCACAGATACCGGgtaggtgacc ... cgcagcacagCCTGTACTACACCCGGATCGAGATCGGCTCGCCGCCCAAGGGCTACTACGT
EST: GGCGCCGTCGACTTGGCCCTCGGCGGCGTCGGGCTCCCCACAGATACCGG CCTGTACTACACCCGGATCGAGATCGGCTCGCCGCCCAAGGGCTACTACGTEST: gi|71438608|gb|DR819658.1|DR819658
genomic: GGCGCCGTCGACTTGGCCCTCGGCGGCGTCGGGCTCCCCACAGATACCGGgtaggtgacc ... cgcagcacagCCTGTACTACACCCGGATCGAGATCGGCTCGCCGCCCAAGGGCTACTACGT
EST: GGCGCCGTCGACTTGGCCCTCGGCGGCGTCGGGCTCCCCACAGATACCGG CCTGTACTACACCCGGATCGAGATCGGCTCGCCGCCCAAGGGCTACTACGTEST: gi|148962846|gb|EE013768.2|EE013768
genomic: GGCGCCGTCGACTTGGCCCTCGGCGGCGTCGGGCTCCCCACAGATACCGGgtaggtgacc ... cgcagcacagCCTGTACTACACCCGGATCGAGATCGGCTCGCCGCCCAAGGGCTACTACGT
EST: GGCGCCGTCGACTTGGCCCTCGGCGGCGTCGGGCTCCCCACAGATACCGG CCTGTACTACACCCGGATCGAGATCGGCTCGCCGCCCAAGGGCTACTACGTEST: gi|50335617|gb|CO530743.1|CO530743
genomic: GGCGCCGTCGACTTGGCCCTCGGCGGCGTCGGGCTCCCCACAGATACCGGgtaggtgacc ... cgcagcacagCCTGTACTACACCCGGATCGAGATCGGCTCGCCGCCCAAGGGCTACTACGT
EST: GGCGCCGTCGACTTGGCCCTCGGCGGCGTCGGGCTCCCCACAGATACCGG CCTGTACTACACCCGGATCGAGATCGGCTCGCCGCCCAAGGGCTACTACGTEST: gi|149010274|gb|EE042101.2|EE042101
genomic: GGCGCCGTCGACTTGGCCCTCGGCGGCGTCGGGCTCCCCACAGATACCGGgtaggtgacc ... cgcagcacagCCTGTACTACACCCGGATCGAGATCGGCTCGCCGCCCAAGGGCTACTACGT
EST: GGCGCCGTCGACTTGGCCCTCGGCGGCGTCGGGCTCCCCACAGATACCGG CCTGTACTACACCCGGATCGAGATCGGCTCGCCGCCCAAGGGCTACTACGTEST: gi|91048431|gb|EB158849.1|EB158849
genomic: GGCGCCGTCGACTTGGCCCTCGGCGGCGTCGGGCTCCCCACAGATACCGGgtaggtgacc ... cgcagcacagCCTGTACTACACCCGGATCGAGATCGGCTCGCCGCCCAAGGGCTACTACGT
EST: GGCGCCGTCGACTTGGCCCTCGGCGGCGTCGGGCTCCCCACAGATACCGG CCTGTACTACACCCGGATCGAGATCGGCTCGCCGCCCAAGGGCTACTACGTEST: gi|211421716|gb|FK968879.1|FK968879
genomic: GGCGCCGTCGACTTGGCCCTCGGCGGCGTCGGGCTCCCCACAGATACCGGgtaggtgacc ... cgcagcacagCCTGTACTACACCCGGATCGAGATCGGCTCGCCGCCCAAGGGCTACTACGT
EST: GGCGCCGTCGACTTGGCCCTCGGCGGCGTCGGGCTCCCCACAGATACCGG CCTGTACTACACCCGGATCGAGATCGGCTCGCCGCCCAAGGGCTACTACGT
genomic: GGCGCCGTCGACTTGGCCCTCGGCGGCGTCGGGCTCCCCACAGATACCGGgtaggtgacc ... cgcagcacagCCTGTACTACACCCGGATCGAGATCGGCTCGCCGCCCAAGGGCTACTACGT
taggtcagtagtatgcttttcttggcgtgtctgactgggggtcttcgcagcacagCCTGTACTACACCCGGATCGAGATCGGCTCGCCGCCCAAGGGCTACTACGTGCAGGTGGACACCGGCAGCGATATCCTCTGGGTCAACTGCATCCGCTGC
gtctgac putative branch site (score: 3)
tcttcgc putative PPT
ttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtgacctatcagcctcgccggcgcgcgctgtttttctggctgcagcttccccataggtcagtagtatgcttttcttggcgtgtctgactgggggtcttcgcagcacagCCTGTACTACACCCGGATCGAGATCGGCTCGCCGCCCAAGGGCTACTACGTGCAGGTGGACACCGGCAGCGATATCCTCTGGGTCAACTGCATCCGCTGC
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