Sequence
atgc intronic sequence ATGC exonic sequencegtcctggactcctggtccaatttactaactgaatcgatcccctgcattcttcttcttcttcttctaccgcatgcatctgttatatattgcgttctgttcctgacgagaagaaaactgcggcgcgtgcaaaacgcgctcgatcggatcagATGGACAAGGCCACGATCCTTTCTGACGCGACGAGATACGTGAGGGATCTCCAAGAAAAGATCAAGGCGCATGAAGACGGCGGCGGCAGTAACGACCGGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G355469_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g46790.1 (Oryza sativa), 3'ss of exon 2
gtcctggactcctggtccaatttactaactgaatcgatcccctgcattcttcttcttcttcttctaccgcatg-catctgttatatattgcgttctgttcctgacgagaagaaaactgcggcgcgtgcaaaacgcgctcgatcggatcagATGGACAAGGCCACGATCCTTTCTGACGCGACGAGATACGTGAGGGATCTCCAAGAAAAGATCAAGGCGCATGAAGA--CGGCGGCGGCAGTAACGACCGGG
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-------------------------------------------------------------gtataaaaaatctcaccaattcctcaacatgaaatgctccgatcga--atttgctttcgtctcgtg----atcgatttgat--gatcagATGGACAAGGCGACGATCCTCTCCGACGCGGCGAGCTACATCAGGGAGCTGCAAGAGAAGCTCAAGGCGCTAGAGGAGCAGGCTGCTGCCAGGGTCACCG-- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgttcctgacgagaagaaaactgcggcgcgtgcaaaacgcgctcgatcggatcagATGGACAAGGCCACGATCCTTTCTGACGCGACGAGATACGTGAGGGATCTCCAAGAAAAGATCAAGGCGCATGAAGACGGCGGCGGCAGTAACGACCGGG
tcctgac putative branch site (score: 2)
aagaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcctggactcctggtccaatttactaactgaatcgatcccctgcattcttcttcttcttcttctaccgcatgcatctgttatatattgcgttctgttcctgacgagaagaaaactgcggcgcgtgcaaaacgcgctcgatcggatcagATGGACAAGGCCACGATCCTTTCTGACGCGACGAGATACGTGAGGGATCTCCAAGAAAAGATCAAGGCGCATGAAGACGGCGGCGGCAGTAACGACCGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA