1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tcagagtcttggtaagtgctacacataatctgctcagcatcatcgatccatagatgatgacctgtgtcttgcatctaacctctctctctctgtctcttagATGTTCACGGTGTTGTCGGAGAGGTTCCTGAAGATCCAGAGGGAGGCGCCGCTGGAGTACCAGCAGTACCTCGTGCAGGTGACCAAGTACCAGGCCGCAC
species | Zea mays |
transcript | GRMZM2G301096_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
atccatagatgatgacctgtgtcttgcatctaacctctctctctctgtctcttagATGTTCACGGTGTTGTCGGAGAGGTTCCTGAAGATCCAGAGGGAGGCGCCGCTGGAGTACCAGCAGTACCTCGTGCAGGTGACCAAGTACCAGGCCGCAC
atctaac putative branch site (score: 2)
catctaacctctctct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcagagtcttggtaagtgctacacataatctgctcagcatcatcgatccatagatgatgacctgtgtcttgcatctaacctctctctctctgtctcttagATGTTCACGGTGTTGTCGGAGAGGTTCCTGAAGATCCAGAGGGAGGCGCCGCTGGAGTACCAGCAGTACCTCGTGCAGGTGACCAAGTACCAGGCCGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - -gtgctac
- - - - - - - - - - - - - -atctgct
- - - - - - - - - - - - - - - - - cagcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - -atgatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcttgca