1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtacggcacgctctgctcaaaccttagccgcttatatatctttttactcgccgttgacgctgcatcttctgtttttcccccgccgtttggcgacgtagCTTAAGGAGTGGCGTTGGTGCCCGAGGAGGAGTGCTCGCTTCTGGCATCCACCCACTCCGTCGTCTCAATTGCAGCGCGGTTGAAGCCGTTCCCGGCCCC
species | Zea mays |
transcript | GRMZM2G177970_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGCTCCTCTCCCACGTCCTCCACCGTCCGCCGCACTTCGCGTACACCTG CTTAAGGAGTGGCGTTGGTGCCCGAGGAGGAGTGCTCGCTTCTGGCATCCAEST: gi|211458161|gb|FL127573.1|FL127573
genomic: GCGCTCCTCTCCCACGTCCTCCACCGTCCGCCGCACTTCGCGTACACCTGgtacggcacg ... ggcgacgtagCTTAAGGAGTGGCGTTGGTGCCCGAGGAGGAGTGCTCGCTTCTGGCATCCA
EST: GCGCTCCTCTCCCACGTCCTCCACCGTCCGCCGCACTTCGCGTACACCTG CTTAAGGAGTGGCGTTGGTGCCCGAGGAGGAGTGCTCGCTTCTGGCATCCAEST: gi|211458164|gb|FL127576.1|FL127576
genomic: GCGCTCCTCTCCCACGTCCTCCACCGTCCGCCGCACTTCGCGTACACCTGgtacggcacg ... ggcgacgtagCTTAAGGAGTGGCGTTGGTGCCCGAGGAGGAGTGCTCGCTTCTGGCATCCA
EST: GCGCTCCTCTCCCACGTCCTCCACCGTCCGCCGCACTTCGCGTACACCTG CTTAAGGAGTGGCGTTGGTGCCCGAGGAGGAGTGCTCGCTTCTGGCATCCAEST: gi|50331394|gb|CO526520.1|CO526520
genomic: GCGCTCCTCTCCCACGTCCTCCACCGTCCGCCGCACTTCGCGTACACCTGgtacggcacg ... ggcgacgtagCTTAAGGAGTGGCGTTGGTGCCCGAGGAGGAGTGCTCGCTTCTGGCATCCA
EST: GCGCTCCTCTCCCACGTCCTCCACCGTCCGCCGCACTTCGCGTACACCTG CTTAAGGAGTGGCGTTGGTGCCCGAGGAGGAGTGCTCGCTTCTGGCATCCAEST: gi|60398533|gb|DN231349.1|DN231349
genomic: GCGCTCCTCTCCCACGTCCTCCACCGTCCGCCGCACTTCGCGTACACCTGgtacggcacg ... ggcgacgtagCTTAAGGAGTGGCGTTGGTGCCCGAGGAGGAGTGCTCGCTTCTGGCATCCA
EST: GCGCTCCTCTCCCACGTCCTCCACCGTCCGCCGCACTTCGCGTACACCTG CTTAAGGAGTGGCGTTGGTGCCCGAGGAGGAGTGCTCGCTTCTGGCATCCAEST: gi|211458162|gb|FL127574.1|FL127574
genomic: GCGCTCCTCTCCCACGTCCTCCACCGTCCGCCGCACTTCGCGTACACCTGgtacggcacg ... ggcgacgtagCTTAAGGAGTGGCGTTGGTGCCCGAGGAGGAGTGCTCGCTTCTGGCATCCA
EST: GCGCTCCTCTCCCACGTCCTCCACCGTCCGCCGCACTTCGCGTACACCTG CTTAAGGAGTGGCGTTGGTGCCCGAGGAGGAGTGCTCGCTTCTGGCATCCAEST: gi|78120428|gb|DV538812.1|DV538812
genomic: GCGCTCCTCTCCCACGTCCTCCACCGTCCGCCGCACTTCGCGTACACCTGgtacggcacg ... ggcgacgtagCTTAAGGAGTGGCGTTGGTGCCCGAGGAGGAGTGCTCGCTTCTGGCATCCA
EST: GCGCTCCTCTCCCACGTCCTCCACCGTCCGCCGCACTTCGCGTACACCTG CTTAAGGAGTGGCGTTGGTGCCCGAGGAGGAGTGCTCGCTTCTGGCATCCAEST: gi|71449704|gb|DR830754.1|DR830754
genomic: GCGCTCCTCTCCCACGTCCTCCACCGTCCGCCGCACTTCGCGTACACCTGgtacggcacg ... ggcgacgtagCTTAAGGAGTGGCGTTGGTGCCCGAGGAGGAGTGCTCGCTTCTGGCATCCA
EST: GCGCTCCTCTCCCACGTCCTCCACCGTCCGCCGCACTTCGCGTACACCTG CTTAAGGAGTGGCGTTGGTGCCCGAGGAGGAGTGCTCGCTTCTGGCATCCAEST: gi|211458163|gb|FL127575.1|FL127575
genomic: GCGCTCCTCTCCCACGTCCTCCACCGTCCGCCGCACTTCGCGTACACCTGgtacggcacg ... ggcgacgtagCTTAAGGAGTGGCGTTGGTGCCCGAGGAGGAGTGCTCGCTTCTGGCATCCA
EST: GCGCTCCTCTCCCACGTCCTCCACCGTCCGCCGCACTTCGCGTACACCTG CTTAAGGAGTGGCGTTGGTGCCCGAGGAGGAGTGCTCGCTTCTGGCATCCA
genomic: GCGCTCCTCTCCCACGTCCTCCACCGTCCGCCGCACTTCGCGTACACCTGgtacggcacg ... ggcgacgtagCTTAAGGAGTGGCGTTGGTGCCCGAGGAGGAGTGCTCGCTTCTGGCATCCA
ttactcgccgttgacgctgcatcttctgtttttcccccgccgtttggcgacgtagCTTAAGGAGTGGCGTTGGTGCCCGAGGAGGAGTGCTCGCTTCTGGCATCCACCCACTCCGTCGTCTCAATTGCAGCGCGGTTGAAGCCGTTCCCGGCCCC
cgttgac putative branch site (score: 14)
tgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacggcacgctctgctcaaaccttagccgcttatatatctttttactcgccgttgacgctgcatcttctgtttttcccccgccgtttggcgacgtagCTTAAGGAGTGGCGTTGGTGCCCGAGGAGGAGTGCTCGCTTCTGGCATCCACCCACTCCGTCGTCTCAATTGCAGCGCGGTTGAAGCCGTTCCCGGCCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC