1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttccaaaccctctcctctcttctctacaggtgtcacctagtcccctctctttcttcaccacccaccaattgctcgatcaatttccccacccggatcaactactgcttcatccatggaccctttcttgctcgagcaattacttcagcgaagcaaatattcttgccttaattcatttacttcctcgttctatggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
species | Zea mays |
transcript | GRMZM2G177914_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAATEST: gi|211469618|gb|FK972985.1|FK972985
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAATEST: gi|19822213|gb|BQ048237.1|BQ048237
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAATEST: gi|211469620|gb|FK972987.1|FK972987
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAATEST: gi|71447059|gb|DR828109.1|DR828109
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAATEST: gi|211467096|gb|FK972975.1|FK972975
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAATEST: gi|211469627|gb|FK972994.1|FK972994
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAATEST: gi|211469622|gb|FK972989.1|FK972989
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG CCACCCGAGAAGCATCAGGACCTCGTC-GCTGTGTCTTCCAATEST: gi|149090359|gb|EE179665.2|EE179665
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAATEST: gi|149073163|gb|EE161440.2|EE161440
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAATEST: gi|211467090|gb|FK972969.1|FK972969
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAATEST: gi|211469619|gb|FK972986.1|FK972986
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAATEST: gi|211467098|gb|FK972977.1|FK972977
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAATEST: gi|211467097|gb|FK972976.1|FK972976
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG CCACCCGAGAAGCATCAGGACCTCGTC-GCTGTGTCTTCCAATEST: gi|211467089|gb|FK972968.1|FK972968
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG CCACCCGAGAAGCATCAGGACCTCGTC-GCTGTGTCTTCCAATEST: gi|5499044|gb|AI854911.1|AI854911
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: TGATCAGCACCCAGGCCATGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG CCACCGGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAATEST: gi|211472147|gb|FK972996.1|FK972996
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAATEST: gi|211472153|gb|FK973002.1|FK973002
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAATEST: gi|211472152|gb|FK973001.1|FK973001
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAATEST: gi|211472150|gb|FK972999.1|FK972999
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAATEST: gi|211467094|gb|FK972973.1|FK972973
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAATEST: gi|26455836|gb|CA827419.1|CA827419
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAATEST: gi|211467100|gb|FK972979.1|FK972979
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAATEST: gi|211469628|gb|FK972995.1|FK972995
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAATEST: gi|211467088|gb|FK972967.1|FK972967
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAATEST: gi|211469626|gb|FK972993.1|FK972993
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAATEST: gi|211469614|gb|FK972981.1|FK972981
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAATEST: gi|71429421|gb|DR810471.1|DR810471
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
agcgaagcaaatattcttgccttaattcatttacttcctcgttctatggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
ccttaat putative branch site (score: 4)
cttcctcgttctat putative PPT
ttaattcatttactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttccaaaccctctcctctcttctctacaggtgtcacctagtcccctctctttcttcaccacccaccaattgctcgatcaatttccccacccggatcaactactgcttcatccatggaccctttcttgctcgagcaattacttcagcgaagcaaatattcttgccttaattcatttacttcctcgttctatggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC