1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgcattttctatcataaatgctaggttatcatttcttaattaatacactcaattgctttgtcaaggttttctttaatatggatttcattatcatttgcagATAGATGAGAATGTCCAGCGCGAAATAATTAACCATAGATCATTGAAACACCCTAACATTATTAGGTTTAAAGAG
species | Zea mays |
transcript | GRMZM2G171435_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCGCACCACCGAACTCGTCGCCGTCAAGTACATCGAGCGTGGCGAGAAG ATAGATGAGAATGTCCAGCGCGAAATAATTAACCATAGATCATTGAAACACEST: gi|211499753|gb|FL295241.1|FL295241
genomic: GCCGCACCACCGAACTCGTCGCCGTCAAGTACATCGAGCGTGGCGAGAAGgtatcgcgct ... tcatttgcagATAGATGAGAATGTCCAGCGCGAAATAATTAACCATAGATCATTGAAACAC
EST: G-CGCACCACCGAACTCGTCGCCGTCAAGTACATCGAGCGTGGCGAGAAG ATAGATGAGAATGTCCAGCGCGAAATAATTAACCATAGATCATTGAAACACEST: gi|211499759|gb|FL295247.1|FL295247
genomic: GCCGCACCACCGAACTCGTCGCCGTCAAGTACATCGAGCGTGGCGAGAAGgtatcgcgct ... tcatttgcagATAGATGAGAATGTCCAGCGCGAAATAATTAACCATAGATCATTGAAACAC
EST: G-CGCACCACCGAACTCGTCGCCGTCAAGTACATCGAGCGTGGCGAGAAG ATAGATGAGAATGTCCAGCGCGAAATAATTAACCATAGATCATTGAAACACEST: gi|148932906|gb|EE285698.2|EE285698
genomic: GCCGCACCACCGAACTCGTCGCCGTCAAGTACATCGAGCGTGGCGAGAAGgtatcgcgct ... tcatttgcagATAGATGAGAATGTCCAGCGCGAAATAATTAACCATAGATCATTGAAACAC
EST: GCCGCACCACCGAACTCGTCGCCGTCAAGTACATCGAGCGTGGCGAGAAG ATAGATGAGAATGTCCAGCGCGAAATAATTAACCATAGATCATTGAAACACEST: gi|211204702|gb|FL178018.1|FL178018
genomic: GCCGCACCACCGAACTCGTCGCCGTCAAGTACATCGAGCGTGGCGAGAAGgtatcgcgct ... tcatttgcagATAGATGAGAATGTCCAGCGCGAAATAATTAACCATAGATCATTGAAACAC
EST: GCCGCACCACCGAACTCGTCGCCGTCAAGTACATCGAGCGTGGCGAGAAG ATAGATGAGAATGTCCAGCGCGAAATAATTAACCATAGATCATTGAAACACEST: gi|211214981|gb|FL178065.1|FL178065
genomic: GCCGCACCACCGAACTCGTCGCCGTCAAGTACATCGAGCGTGGCGAGAAGgtatcgcgct ... tcatttgcagATAGATGAGAATGTCCAGCGCGAAATAATTAACCATAGATCATTGAAACAC
EST: GCCGCACCACCGAACTCGTCGCCGTCAAGTACATCGAGCGTGGCGAGAAG ATAGATGAGAATGTCCAGCGCGAAATAATTAACCATAGATCATTGAEST: gi|78107855|gb|DV526273.1|DV526273
genomic: GCCGCACCACCGAACTCGTCGCCGTCAAGTACATCGAGCGTGGCGAGAAGgtatcgcgct ... tcatttgcagATAGATGAGAATGTCCAGCGCGAAATAATTAACCATAGATCATTGA
EST: GCCGCACCACCGAACTCGTCGCCGTCAAGTACATCGAGCGTGGCGAGAAG ATAGATGAGAATGTCCAGCGCGAAATAATTAACCATAGATCATTGAAACACEST: gi|211108565|gb|FL429107.1|FL429107
genomic: GCCGCACCACCGAACTCGTCGCCGTCAAGTACATCGAGCGTGGCGAGAAGgtatcgcgct ... tcatttgcagATAGATGAGAATGTCCAGCGCGAAATAATTAACCATAGATCATTGAAACAC
EST: GCGGCACCACCGAACTCGTCGCCGTCAAGTACATCGAGCGTGGCGAGAAG ATAGATGAGAATGTCCAGCGCGAAATAATTAACCATAGATCATTGAAACACEST: gi|211166134|gb|FL157545.1|FL157545
genomic: GCCGCACCACCGAACTCGTCGCCGTCAAGTACATCGAGCGTGGCGAGAAGgtatcgcgct ... tcatttgcagATAGATGAGAATGTCCAGCGCGAAATAATTAACCATAGATCATTGAAACAC
EST: GCCGCACCACCGAACTCGTCGCCGTCAAGTACATCGAGCGTGGCGAGAAG ATAGATGAGAATGTCCAGCGCGAAATAATTAACCATAGATCATTGAAACAC
genomic: GCCGCACCACCGAACTCGTCGCCGTCAAGTACATCGAGCGTGGCGAGAAGgtatcgcgct ... tcatttgcagATAGATGAGAATGTCCAGCGCGAAATAATTAACCATAGATCATTGAAACAC
cactcaattgctttgtcaaggttttctttaatatggatttcattatcatttgcagATAGATGAGAATGTCCAGCGCGAAATAATTAACCATAGATCATTGAAACACCCTAACATTATTAGGTTTAAAGAG
ctttaat putative branch site (score: 4)
atttcattatcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcattttctatcataaatgctaggttatcatttcttaattaatacactcaattgctttgtcaaggttttctttaatatggatttcattatcatttgcagATAGATGAGAATGTCCAGCGCGAAATAATTAACCATAGATCATTGAAACACCCTAACATTATTAGGTTTAAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
tgcattt
- - - - - - - - - tgctagg
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcatt