Sequence
atgc intronic sequence ATGC exonic sequence...attggctcagcgtcggcatttgtcgattcttagtgtgtgatggcttctggaaatgcagcttactgaacgctgcgcgtgttcatcgctttgcgacgtgcagGGCTTCAGAAAGATCGACCCGGACAGCTGGGAGTTCGCGAACGAAGGATTCCTGAGGGGCCAGAGGCATCTTCTCCGGCTGATCAAGCGTCGAAGGCCGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G165972_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g06630.2 (Oryza sativa), 3'ss of exon 1
attggctcagcgtcggcatttgtcgattcttagtgtg--tgatggcttctggaaatgcagcttactgaacgctgcgcgtgttcatcgc-tttgcgacgtgcagGGCTTCAGAAAGATCGACCCGGACAGCTGGGAGTTCGCGAACGAAGGATTCCTGAGGGGCCAGAGGCATCTTCTCCGGCTGATCAAGCGTCGAAGGCCGG
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acatactttgtgtgacttgctatcctaattgagttttgtctgtggcttctgtacttg-aactaactatac-ctgta-atattctttgtgtttgcaatttgcagGGTTTCAGAAAGATTGATCCTGACAGATGGGAATTCGCGAATGATGGTTTCCTGAGAGGCCAGAGGCATCTTCTAAAGATGATTAAGAGGAGGAGACCAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctggaaatgcagcttactgaacgctgcgcgtgttcatcgctttgcgacgtgcagGGCTTCAGAAAGATCGACCCGGACAGCTGGGAGTTCGCGAACGAAGGATTCCTGAGGGGCCAGAGGCATCTTCTCCGGCTGATCAAGCGTCGAAGGCCGG
agcttac putative branch site (score: 3)
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attggctcagcgtcggcatttgtcgattcttagtgtgtgatggcttctggaaatgcagcttactgaacgctgcgcgtgttcatcgctttgcgacgtgcagGGCTTCAGAAAGATCGACCCGGACAGCTGGGAGTTCGCGAACGAAGGATTCCTGAGGGGCCAGAGGCATCTTCTCCGGCTGATCAAGCGTCGAAGGCCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - -gcatttg
- - - - - - - - - - - - - - - - - -tgtgatg
- - - - - - - - - - - - - - - - - - - - - gcttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - atgcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgcgc