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...ttgagcgaatcctaagtttcataatggcataaatccaattttctcacggcagggtgtagtagttggtaattgctgtttcggttggttggttcttttgcagAAGAAGGGATCAAGGAACAGCGACCAGAGAAAGGCTGCGTCTGCTGCTGCTCCTACGGCTGCTGATGCTACGAACAAGAGGCCCAGG
species | Zea mays |
transcript | GRMZM2G157836_T05 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGGCGTGCGGGCGTCCGCGGTCCATCCATCGATCCAATTCCAATCTGCAG AAGAAGGGATCCAGGAACAGCGACCAGAGAAAGGCTGCGTCTGCTGCTGEST: gi|91051873|gb|EB162291.1|EB162291
genomic: CGGCGTGCGGGCGTCCGCGGTCCATCCATCGATCCAATTCCAATCTGCAGgtgagcagct ... tcttttgcagAAGAAGGGATCAAGGAACAGCGACCAGAGAAAGGCTGCGTCTGCTGCTG
EST: CGGCGTGCGGGCGTCCGCGGTCCATCCATCGATCCAATTCCAATCTGCAG AAGAAGGGATCAAGGAACAGCGACCAGAGAAAGGCTGCGTCTGCTGCTGCTEST: gi|78087902|gb|DV516295.1|DV516295
genomic: CGGCGTGCGGGCGTCCGCGGTCCATCCATCGATCCAATTCCAATCTGCAGgtgagcagct ... tcttttgcagAAGAAGGGATCAAGGAACAGCGACCAGAGAAAGGCTGCGTCTGCTGCTGCT
EST: CGGCGTGCGGGCGTCCGCGGTCCATCCATCGATCCAATTCCAATCTGCAG AAGAAGGGATCAAGGAACAGCGACCAGAGAAAGGCTGCGTCTGCTGCTGCTEST: gi|50332338|gb|CO527464.1|CO527464
genomic: CGGCGTGCGGGCGTCCGCGGTCCATCCATCGATCCAATTCCAATCTGCAGgtgagcagct ... tcttttgcagAAGAAGGGATCAAGGAACAGCGACCAGAGAAAGGCTGCGTCTGCTGCTGCT
EST: CGGCGTGCGGGCGTCCGCGGTCCATCCATCGATCCAATTCCAATCTGCAG AAGAAGGGATCAAGGAACAGCGACCAGAGAAAGGCTGCGTCTGCTGCTGCTEST: gi|101400847|gb|EB822121.1|EB822121
genomic: CGGCGTGCGGGCGTCCGCGGTCCATCCATCGATCCAATTCCAATCTGCAGgtgagcagct ... tcttttgcagAAGAAGGGATCAAGGAACAGCGACCAGAGAAAGGCTGCGTCTGCTGCTGCT
EST: CGGCGTGCGGGCGTCCGCGGTCCATCCATCGATCCAATTCCAATCTGCAG AAGAAGGGATCAAGGAACAGCGACCAGAGAAAGGCTGCGTCTGCTGCTGCTEST: gi|71445496|gb|DR826546.1|DR826546
genomic: CGGCGTGCGGGCGTCCGCGGTCCATCCATCGATCCAATTCCAATCTGCAGgtgagcagct ... tcttttgcagAAGAAGGGATCAAGGAACAGCGACCAGAGAAAGGCTGCGTCTGCTGCTGCT
EST: CGGCGTGCGGGCGTCCGCGGTCCATCCATCGATCCAATTCCAATCTGCAG AAGAAGGGATCAAGGAACAGCGACCAGAGAAAGGCTGCGTCTGCTGCTGCTEST: gi|71436780|gb|DR817830.1|DR817830
genomic: CGGCGTGCGGGCGTCCGCGGTCCATCCATCGATCCAATTCCAATCTGCAGgtgagcagct ... tcttttgcagAAGAAGGGATCAAGGAACAGCGACCAGAGAAAGGCTGCGTCTGCTGCTGCT
EST: CGGCGTGCGGGCGTCCGCGGTCCATCCATCGATCCAATTCCAATCTGCAG AAGAAGGGATCAAGGAACAGCGACCAGAGAAAGGCTGCGTCTGCTGCTGCT
genomic: CGGCGTGCGGGCGTCCGCGGTCCATCCATCGATCCAATTCCAATCTGCAGgtgagcagct ... tcttttgcagAAGAAGGGATCAAGGAACAGCGACCAGAGAAAGGCTGCGTCTGCTGCTGCT
acggcagggtgtagtagttggtaattgctgtttcggttggttggttcttttgcagAAGAAGGGATCAAGGAACAGCGACCAGAGAAAGGCTGCGTCTGCTGCTGCTCCTACGGCTGCTGATGCTACGAACAAGAGGCCCAGG
ttctcac putative branch site (score: 2)
ttcttttgc putative PPT
ttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgagcgaatcctaagtttcataatggcataaatccaattttctcacggcagggtgtagtagttggtaattgctgtttcggttggttggttcttttgcagAAGAAGGGATCAAGGAACAGCGACCAGAGAAAGGCTGCGTCTGCTGCTGCTCCTACGGCTGCTGATGCTACGAACAAGAGGCCCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggttg