Sequence
atgc intronic sequence ATGC exonic sequence...tttttagattcgactacatgattaacctggaaccagccattctgttaacttactctacatgattgaagtgtaatgttatgttatgccattttctcactgcCAGGTCACTTGTTTTGAAGGCTATGAGGAAGAAACACTTCTACAAAAAAAAACAATACGAATTGACAGACTATTTCCAAATGAAGATTTGACTTCAACAA
Basic information
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taacttactctacatgattgaagtgtaatgttatgttatgccattttctcactgcCAGGTCACTTGTTTTGAAGGCTATGAGGAAGAAACACTTCTACAAAAAAAAACAATACGAATTGACAGACTATTTCCAAATGAAGATTTGACTTCAACAA
aacttac putative branch site (score: 2)
ccattttctc putative PPT
taatgttatgttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttttagattcgactacatgattaacctggaaccagccattctgttaacttactctacatgattgaagtgtaatgttatgttatgccattttctcactgcCAGGTCACTTGTTTTGAAGGCTATGAGGAAGAAACACTTCTACAAAAAAAAACAATACGAATTGACAGACTATTTCCAAATGAAGATTTGACTTCAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - -ctacatg
- - - - - - - - catgatt
- - - - - - - - - - - - acctgga
- - - - - - - - - - - - - - - - - -gccattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgccatt