1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgacgcagggtctttacctctaaactcgatcgccttgtcagagccgtccgcccctcacagccttgctccttcccgtttgccttgacgtgctctccttttgaaaccattgcttgtgatttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
species | Zea mays |
transcript | GRMZM2G153991_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGEST: gi|211117648|gb|FL049547.1|FL049547
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGEST: gi|91054743|gb|EB165161.1|EB165161
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGEST: gi|24773940|gb|CA409194.1|CA409194
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: GCTGATCTGCCTCG-GGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGEST: gi|149005134|gb|EE039667.2|EE039667
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGEST: gi|22819346|gb|BU499436.1|BU499436
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: CTGATCTGCCTCGATGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGEST: gi|148931677|gb|EC874859.2|EC874859
genomic: CTGATCTGCCTCG-TGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGEST: gi|211116860|gb|FL049534.1|FL049534
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: GCTGATCTGCCTCGKGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG CGTCGGCCRRGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGEST: gi|211150009|gb|FL374643.1|FL374643
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: S-TGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGEST: gi|30031800|gb|CB833651.1|CB833651
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGEST: gi|211240981|gb|FL293639.1|FL293639
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: GTCGCCGCCGCGGCCATCCTCCTGACAG CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGEST: gi|211117646|gb|FL049545.1|FL049545
genomic: GTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: SSTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGEST: gi|211205079|gb|FL419130.1|FL419130
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: TCCTCCTGACAG CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGEST: gi|211117644|gb|FL049543.1|FL049543
genomic: TCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: S-TGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGEST: gi|211117643|gb|FL049542.1|FL049542
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGEST: gi|211116864|gb|FL049538.1|FL049538
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: -STGATCTGCCTCGTGGCCGCCGTCGCCGCCGC-GCCATCCTCCTGACAG CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGEST: gi|211117642|gb|FL049541.1|FL049541
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGEST: gi|211082659|gb|FL412223.1|FL412223
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGEST: gi|211117649|gb|FL049548.1|FL049548
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGEST: gi|116823847|gb|EC867424.1|EC867424
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: GCGG-CATCCTCCTGACAG CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGEST: gi|211116857|gb|FL049531.1|FL049531
genomic: GCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: TGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGEST: gi|211117645|gb|FL049544.1|FL049544
genomic: TGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGEST: gi|211116862|gb|FL049536.1|FL049536
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: SSTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGEST: gi|22542120|gb|BU092558.1|BU092558
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGEST: gi|211079084|gb|FL380731.1|FL380731
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGEST: gi|61117989|gb|DN558950.1|DN558950
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGEST: gi|32865924|gb|CF005606.1|CF005606
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGEST: gi|211453697|gb|FL370753.1|FL370753
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGEST: gi|149090104|gb|EE179400.2|EE179400
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGEST: gi|211389797|gb|FL380127.1|FL380127
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGEST: gi|21987364|gb|BQ778892.1|BQ778892
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGEST: gi|211122276|gb|FL373651.1|FL373651
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGEST: gi|149071444|gb|EE159839.2|EE159839
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGEST: gi|149005133|gb|EE039666.2|EE039666
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: CCGCCGCGGCCATCCTCCTGACAG CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGEST: gi|60399310|gb|DN232124.1|DN232124
genomic: CCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGEST: gi|211059587|gb|FL481931.1|FL481931
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGEST: gi|149071445|gb|EE159840.2|EE159840
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGEST: gi|24773190|gb|CA408444.1|CA408444
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
ccgtttgccttgacgtgctctccttttgaaaccattgcttgtgatttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
ccttgac putative branch site (score: 149)
ttttgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgacgcagggtctttacctctaaactcgatcgccttgtcagagccgtccgcccctcacagccttgctccttcccgtttgccttgacgtgctctccttttgaaaccattgcttgtgatttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
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