1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gcacttatacacaatacattagtctctaaaacaatgtactaagtctgagaaacatacctttatacttgatttgtactttgtccaccattattctgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGATG
species | Zea mays |
transcript | GRMZM2G149662_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGGCCAAGTCGCCGCCGCGACCCAGCTCGCCCACCACCTCCACACGCAAG GCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGAEST: gi|149096821|gb|EE182610.2|EE182610
genomic: CGGCCAAGTCGCCGCCGCGGCCCAGCTCGCCCACCACCTCCACACGCAAGgtccggatct ... ttctgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGA
EST: CGGCCAAGTCGCCGCCGCGGCCCAGCTCGCCCACCACCTCCACACGCAAG GCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGAEST: gi|78081652|gb|DV510064.1|DV510064
genomic: CGGCCAAGTCGCCGCCGCGGCCCAGCTCGCCCACCACCTCCACACGCAAGgtccggatct ... ttctgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGA
EST: CGGCCAAGTCGCCGCCGCGGCCCAGCTCGCCCACCACCTCCACACGCAAG GCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGAEST: gi|50323915|gb|CO519041.1|CO519041
genomic: CGGCCAAGTCGCCGCCGCGGCCCAGCTCGCCCACCACCTCCACACGCAAGgtccggatct ... ttctgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGA
EST: CGGCCAAGTCGCCGCCGCGGCCCAGCTCGCCCACCACCTCCACACGCAAG GCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGAEST: gi|76288284|gb|DV027852.1|DV027852
genomic: CGGCCAAGTCGCCGCCGCGGCCCAGCTCGCCCACCACCTCCACACGCAAGgtccggatct ... ttctgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGA
EST: CGGCCAAGTCGCCGCCGCGGCCCAGCTCGCCCACCACCTCCACACGCAAG GCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGAEST: gi|91053026|gb|EB163444.1|EB163444
genomic: CGGCCAAGTCGCCGCCGCGGCCCAGCTCGCCCACCACCTCCACACGCAAGgtccggatct ... ttctgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGA
EST: CGGCCAAGTCGCCGCCGCGGCCCAGCTCGCCCACCACCTCCACACGCAAG GCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGAEST: gi|148956825|gb|EC902729.2|EC902729
genomic: CGGCCAAGTCGCCGCCGCGGCCCAGCTCGCCCACCACCTCCACACGCAAGgtccggatct ... ttctgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGA
EST: CGGCCAAGTCGCCGCCGCGGCCCAGCTCGCCCACCACCTCCACACGCAAG GCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGAEST: gi|149109464|gb|EE190213.2|EE190213
genomic: CGGCCAAGTCGCCGCCGCGGCCCAGCTCGCCCACCACCTCCACACGCAAGgtccggatct ... ttctgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGA
EST: CGGCCAAGTCGCCGCCGCGGCCCAGCTCGCCCACCACCTCCACACGCAAG GCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGAEST: gi|5325136|gb|AI783327.1|AI783327
genomic: CGGCCAAGTCGCCGCCGCGGCCCAGCTCGCCCACCACCTCCACACGCAAGgtccggatct ... ttctgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGA
EST: CCCA-CTCGCCCACCACCTCCACACGC-AG GCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGAEST: gi|71771810|gb|DR969747.1|DR969747
genomic: CCCAGCTCGCCCACCACCTCCACACGCAAGgtccggatct ... ttctgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGA
EST: CGGCCAAGTCGCCGCCGCGGCCCAGCTCGCCCACCACCTCCACACGCAAG GCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGAEST: gi|211293665|gb|FL114589.1|FL114589
genomic: CGGCCAAGTCGCCGCCGCGGCCCAGCTCGCCCACCACCTCCACACGCAAGgtccggatct ... ttctgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGA
EST: CGGCCAAGTCGCCGCCGCGGCCCAGCTCGCCCACCACCTCCACACGCAAG GCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGAEST: gi|74034904|gb|DT535394.1|DT535394
genomic: CGGCCAAGTCGCCGCCGCGGCCCAGCTCGCCCACCACCTCCACACGCAAGgtccggatct ... ttctgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGA
EST: CGGCCAAGTCGCCGCCGCGACCCAGCTCGCCCACCACCTCCACACGCAAG GCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGAEST: gi|5901280|gb|AW042380.1|AW042380
genomic: CGGCCAAGTCGCCGCCGCGGCCCAGCTCGCCCACCACCTCCACACGCAAGgtccggatct ... ttctgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGA
EST: CCCAGCTCGCCCACCACCTCCACACGCAAG GCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGAEST: gi|88756505|gb|DY540646.1|DY540646
genomic: CCCAGCTCGCCCACCACCTCCACACGCAAGgtccggatct ... ttctgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGA
EST: CGGCCAAGTCGCCGCCGCGGCCCAGCTCGCCCACCACCTCCACACGCAAG GCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGAEST: gi|32862594|gb|CF002276.1|CF002276
genomic: CGGCCAAGTCGCCGCCGCGGCCCAGCTCGCCCACCACCTCCACACGCAAGgtccggatct ... ttctgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGA
EST: CGGCCAAGTCGCCGCCGCGACCCAGCTCGCCCACCACCTCCACACGCAAG GCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGAEST: gi|71440103|gb|DR821153.1|DR821153
genomic: CGGCCAAGTCGCCGCCGCGGCCCAGCTCGCCCACCACCTCCACACGCAAGgtccggatct ... ttctgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGA
EST: CGGCCAAGTCGCCGCCGCGGCCCAGCTCGCCCACCACCTCCACACGCAAG GCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGAEST: gi|50331144|gb|CO526270.1|CO526270
genomic: CGGCCAAGTCGCCGCCGCGGCCCAGCTCGCCCACCACCTCCACACGCAAGgtccggatct ... ttctgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGA
EST: CGGCCAAGTCGCCGCCGCGGCCCAGCTCGCCCACCACCTCCACACGCAAG GCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGAEST: gi|78077279|gb|DV505713.1|DV505713
genomic: CGGCCAAGTCGCCGCCGCGGCCCAGCTCGCCCACCACCTCCACACGCAAGgtccggatct ... ttctgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGA
EST: CGGCCAAGTCGCCGCCGCGGCCCAGCTCGCCCACCACCTCCACACGCAAG GCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCCAGAAAGTTTATGACTGGAEST: gi|71772305|gb|DR970241.1|DR970241
genomic: CGGCCAAGTCGCCGCCGCGGCCCAGCTCGCCCACCACCTCCACACGCAAGgtccggatct ... ttctgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGA
EST: CGGCCAAGTCGCCGCCGCGGCCCAGCTCGCCCACCACCTCCACACGCAAG GCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGAEST: gi|71446982|gb|DR828032.1|DR828032
genomic: CGGCCAAGTCGCCGCCGCGGCCCAGCTCGCCCACCACCTCCACACGCAAGgtccggatct ... ttctgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGA
EST: CGGCCAAGTCGCCGCCGCGGCCCAGCTCGCCCACCACCTCCACACGCAAG GCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGA
genomic: CGGCCAAGTCGCCGCCGCGGCCCAGCTCGCCCACCACCTCCACACGCAAGgtccggatct ... ttctgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGA
tgagaaacatacctttatacttgatttgtactttgtccaccattattctgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGATG
acttgat putative branch site (score: 5)
ttattct putative PPT
tttatacttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcacttatacacaatacattagtctctaaaacaatgtactaagtctgagaaacatacctttatacttgatttgtactttgtccaccattattctgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA