1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcttgcagtgtaatttcagtaaaattctgctcctaattttctgcgcggttgttttcctttgccttaatgttggtctaaaatcgattataaacttgcgcagACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACACCATACAGAGTTACATGGGATTACTACTTTCTGGGGCGAGAGCACACTC
species | Zea mays |
transcript | GRMZM2G139374_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCACAACGAGACCGGGTCCAAGTACGGCGGCGGCACGCTCCATATCAAG ACATCCAAAGCGCACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACAEST: gi|110202367|gb|EC884264.1|EC884264
genomic: TCCACAACGAGAGCGGGTCCAAGTACGGCGGCGGCACACTCCATATCAAGgtacgggcct ... acttgcgcagACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACA
EST: TTCACAACGAGAGCGGGTCCAAGTACGGCGGCGGCACACTCCATATCAAG ACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACAEST: gi|211004794|gb|FL233604.1|FL233604
genomic: TCCACAACGAGAGCGGGTCCAAGTACGGCGGCGGCACACTCCATATCAAGgtacgggcct ... acttgcgcagACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACA
EST: TCCACAACGAGACCGGGTCCAAGTACGGCGGCGGCACGCTCCATATCAAG ACATCCAAAGCGCACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACAEST: gi|211231193|gb|FL349074.1|FL349074
genomic: TCCACAACGAGAGCGGGTCCAAGTACGGCGGCGGCACACTCCATATCAAGgtacgggcct ... acttgcgcagACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACA
EST: TCCACAACGAGAGCGGGTCCAAGTACGGCGGCGGCACACTCCATATCAAG ACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCA-CAEST: gi|211004797|gb|FL233607.1|FL233607
genomic: TCCACAACGAGAGCGGGTCCAAGTACGGCGGCGGCACACTCCATATCAAGgtacgggcct ... acttgcgcagACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACA
EST: TCCACAACGAGACCGGGTCCAAGTACGGCGGCGGCACGCTCCATATCAAG ACATCCAAAGCGCACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACAEST: gi|148931314|gb|EC874175.2|EC874175
genomic: TCCACAACGAGAGCGGGTCCAAGTACGGCGGCGGCACACTCCATATCAAGgtacgggcct ... acttgcgcagACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACA
EST: TCCACAACGAGAGCGGGTCCAAGTACGGCGGCGGCACACTCCATATCAAG ACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACAEST: gi|211004799|gb|FL233609.1|FL233609
genomic: TCCACAACGAGAGCGGGTCCAAGTACGGCGGCGGCACACTCCATATCAAGgtacgggcct ... acttgcgcagACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACA
EST: TCCACAACGAGACCGGGTCCAAGTACGGCGGCGGCACGCTCCATATCAAG ACATCCAAAGCGCACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACAEST: gi|93284093|gb|EB676357.1|EB676357
genomic: TCCACAACGAGAGCGGGTCCAAGTACGGCGGCGGCACACTCCATATCAAGgtacgggcct ... acttgcgcagACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACA
EST: TCCACAACGAGAGCGGGTCCAAGTACGGCGGCGGCACACTCCATATCAAG ACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACAEST: gi|148955706|gb|EC901392.2|EC901392
genomic: TCCACAACGAGAGCGGGTCCAAGTACGGCGGCGGCACACTCCATATCAAGgtacgggcct ... acttgcgcagACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACA
EST: TCCACAACGAGAGCGGGTCCAAGTACGGCGGCGGCACACTCCATATCAAG ACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACAEST: gi|101393781|gb|EB818823.1|EB818823
genomic: TCCACAACGAGAGCGGGTCCAAGTACGGCGGCGGCACACTCCATATCAAGgtacgggcct ... acttgcgcagACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACA
EST: TCCACAACGAGAGCGGGTCCAAGTACGGCGGCGGCACACTCCATATCAAG ACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACAEST: gi|76011882|gb|DT939052.1|DT939052
genomic: TCCACAACGAGAGCGGGTCCAAGTACGGCGGCGGCACACTCCATATCAAGgtacgggcct ... acttgcgcagACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACA
EST: TCCACAACGAGAGCGGGTCCAAGTACGGCGGCGGCACACTCCATATCAAG ACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACAEST: gi|149110172|gb|EE293987.2|EE293987
genomic: TCCACAACGAGAGCGGGTCCAAGTACGGCGGCGGCACACTCCATATCAAGgtacgggcct ... acttgcgcagACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACA
EST: TCCACAACGAGAGCGGGTCCAAGTACGGCGGCGGCACACTCCATATCAAG ACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACAEST: gi|74235211|gb|DT643125.1|DT643125
genomic: TCCACAACGAGAGCGGGTCCAAGTACGGCGGCGGCACACTCCATATCAAGgtacgggcct ... acttgcgcagACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACA
EST: TCCACAACGAGAGCGGGTCCAAGTACGGCGGCGGCACACTCCATATCAAG ACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACAEST: gi|148965948|gb|EE016864.2|EE016864
genomic: TCCACAACGAGAGCGGGTCCAAGTACGGCGGCGGCACACTCCATATCAAGgtacgggcct ... acttgcgcagACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACA
EST: TCCACAACGAGAGCGGGTCCAAGTACGGCGGCGGCACACTCCATATCAAG ACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACAEST: gi|211364274|gb|FL199171.1|FL199171
genomic: TCCACAACGAGAGCGGGTCCAAGTACGGCGGCGGCACACTCCATATCAAGgtacgggcct ... acttgcgcagACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACA
EST: C-ACAACGAGAGCGGGTCCAAGTACGGCGGCGGCACACTCCATATNCA-G ACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACEST: gi|149079827|gb|EE168827.2|EE168827
genomic: CCACAACGAGAGCGGGTCCAAGTACGGCGGCGGCACACTCCATAT-CAAGgtacgggcct ... acttgcgcagACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCAAC
EST: TCCACAACGAGAGCGGGTCCAAGTACGGCGGCGGCACACTCCATATCAAG ACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACAEST: gi|211004795|gb|FL233605.1|FL233605
genomic: TCCACAACGAGAGCGGGTCCAAGTACGGCGGCGGCACACTCCATATCAAGgtacgggcct ... acttgcgcagACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACA
EST: TCCACAACGAGACCGGGTCCAAGTACGGCGGCGGCACGCTCCATATCAAG ACATCCAAAGCGCACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACAEST: gi|148946744|gb|EC892010.2|EC892010
genomic: TCCACAACGAGAGCGGGTCCAAGTACGGCGGCGGCACACTCCATATCAAGgtacgggcct ... acttgcgcagACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACA
EST: TCCACAACGAGAGCGGGTCCAAGTACGGCGGCGGCACACTCCATATCAAG ACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACAEST: gi|148967020|gb|EE018178.2|EE018178
genomic: TCCACAACGAGAGCGGGTCCAAGTACGGCGGCGGCACACTCCATATCAAGgtacgggcct ... acttgcgcagACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACA
EST: TCCACAACGAGAGCGGGTCCAAGTACGGCGGCGGCACACTCCATATCAAG ACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACAEST: gi|71311670|gb|DR792243.1|DR792243
genomic: TCCACAACGAGAGCGGGTCCAAGTACGGCGGCGGCACACTCCATATCAAGgtacgggcct ... acttgcgcagACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACA
EST: TCCACAACGAGAGCGGGTCCAAGTACGGCGGCGGCACACTCCATATCAAG ACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACA
genomic: TCCACAACGAGAGCGGGTCCAAGTACGGCGGCGGCACACTCCATATCAAGgtacgggcct ... acttgcgcagACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACA
cggttgttttcctttgccttaatgttggtctaaaatcgattataaacttgcgcagACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACACCATACAGAGTTACATGGGATTACTACTTTCTGGGGCGAGAGCACACTC
gtctaaa putative branch site (score: 177)
taaaatcgattataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttgcagtgtaatttcagtaaaattctgctcctaattttctgcgcggttgttttcctttgccttaatgttggtctaaaatcgattataaacttgcgcagACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACACCATACAGAGTTACATGGGATTACTACTTTCTGGGGCGAGAGCACACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
tcttgca
- - - - - - - - cagtaaaa
- - - - - - - - - - - - - ctgctcc
- - - - - - - - - - - - - - - - - - ttttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttggt