1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgaatgaatataacgaatccgccgccggcgtcatctcctcctcccacctcgactcgccttggtcgccgtcggcggccatttcgtcgccgcgcggcgagccgcccatgttgagctcgcggcggatctgatgggcttgttgtgatctcctgcagGTAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTC
species | Zea mays |
transcript | GRMZM2G135727_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATTGTGGCTCCTCACTTCTGCGCCGCCACCCACTACAG GTAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGEST: gi|211392488|gb|FL384047.1|FL384047
genomic: ATTGTGGCTCCTCACTTCTGCGCCGCCACCCACTACAGgtgaatgaat ... tctcctgcagGTAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAG
EST: ACGCGCATTGTGGCTCCTCACTTCTGCGCCGCCACCCACTACAG GTAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAEST: gi|211275116|gb|FL386915.1|FL386915
genomic: ACGCGCATTGTGGCTCCTCACTTCTGCGCCGCCACCCACTACAGgtgaatgaat ... tctcctgcagGTAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGA
EST: GCATTGTGGCTCCTCACTTCTGCGCCGCCACCCACTACAG GTAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGA
genomic: GCATTGTGGCTCCTCACTTCTGCGCCGCCACCCACTACAGgtgaatgaat ... tctcctgcagGTAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGA
gccgcccatgttgagctcgcggcggatctgatgggcttgttgtgatctcctgcagGTAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTC
atctgat putative branch site (score: 4)
tctcctgc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaatgaatataacgaatccgccgccggcgtcatctcctcctcccacctcgactcgccttggtcgccgtcggcggccatttcgtcgccgcgcggcgagccgcccatgttgagctcgcggcggatctgatgggcttgttgtgatctcctgcagGTAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG